Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00675 ATGTCTAAAGAAGAACTCATGTTATTAGTGTTACAACATTTTCAGGAGGAAGGTTTAATGGAAACAGCACAGACGTTTGGGCGTGAAACTGGGATGTACTTCGACTGTAAGTATTTTGAGTATATGGTACTTGATGGAAAGTGGGATGAGGTTGAGAAATATCTTTCTGGATTCATGAAAATTGAAGACAGTAATCACTCACTCAAAATATTCTTTGAGTTAAGAAAGCAAAAATACCTTGAGGCATTGGACAGCAATGATCGTGGCAGGGCTTTAGATATCCTCATGAAGGATCTGAAAGTCTTCAGCTCAAAGAATGAAGAATTATTTAAAGAATTGACTCAACTTTTGACAGTTAACAATATAAGAGAACATCATGCACTTTCAACATATCAAGATGCAATTTCTGGAAGAAAGAGGGTGATGAATGATATTAAGGAAATCATAGAGAACCATCCTATGCTAGATGGAAAATTGACAATCCCTGCCTATAAAAGTCAGAGTCTAAAGCAGCTTCTAATTGAAAGATTAAATTATCAGCATCAAAATAATGTTCCAGCTGCTCCAAAAGAGGGCATTTTTATGAATCATGTTCATGTCCATTCCAGACCATCTACTTCTGCTTCAATAAATCAAGGAATAGATTTGAAATCTGAGTTCATTGAAAAATCCGTCAAAGTATCAAAGTTGGTTCATATTTATACACCATCTCAATGTCAATTGTTGCTACTCCCTAAACATTCAGAAGCAAACAAGATTGCTAGACTCGCCTACACAAATGCGGGAAATGGCATTATTGCATTGACATCAAATGGTGTTCATCCACTTTGGCTATGTCCACATGCTGCCAATGATTTGGATTCCAAGGTAACAACACAAGTTTGTCCTCAATTGTGGAATCCAAATAGTGACTTGAAATTAATTATGAGGAATGACCTTAATCATGCCAATGGTGAAGATTTAGTTTCATGTTTTGCTATAACAAGAGATAGATATCTCATATCAACATCAGGAGGGATGACTACTTTGTTCAACATGATGACATTTGAGGTTATGCTGACTATCTTTGAACCTCCACCAATGGTAACATGTCTTGCCTTCTATCCTGAAGATAATAATACAATTGTTGTTGGCTATGATGACTCCAGCATAATTATAATTAATGTTCGAAGCAATGATCAGGATCAAATCAAGCTTGAGGGTCATTCTAAAAGAGTTACTTCTTTTGCCTTCTCAACTGCTTTGAATGTTCTTGTTTCTGCTGATGCAAGTGCTCAGATTATTGTATGGAATAGCAGAAGCTGGGAAAAATTGAGAGATAGAAACTTACAAATGAATGTACCAAATGTGACACAAATATTATCTGAAACTCAAGTACATTTTCACCCTGACCAGAAAAAATTTCTTGTTGCACATAATATTCATCTTGGAATTTATGAAGCAACAGAACTAAAATGTTTCAGCAAGTGGGATCCAAATTTTACAACAGTAATCAACCAGGCAACATTTTCATCTAATGGTCAAATGGTGTATGCTAGTTTTGGTGATGGAACTTTGGCTATATTTGATGCATCAAATTTTCAAATGCATTATATGATTCATCCCTCTCTTTACCTTTCATCAATTTCCAGTTTGAAAATCTACCCAACTGCTATAGCTGCAAATCCTCAGAAACCAAACCAATTTGCTGCAGGATTTACAGATGGTAATGTTTGTGTGTTTGAGCCAAAGGAACCAAGTGGTAATTGGATTGTGCCTCAAGTTTGA 1767 0.356 MSKEELMLLVLQHFQEEGLMETAQTFGRETGMYFDCKYFEYMVLDGKWDEVEKYLSGFMKIEDSNHSLKIFFELRKQKYLEALDSNDRGRALDILMKDLKVFSSKNEELFKELTQLLTVNNIREHHALSTYQDAISGRKRVMNDIKEIIENHPMLDGKLTIPAYKSQSLKQLLIERLNYQHQNNVPAAPKEGIFMNHVHVHSRPSTSASINQGIDLKSEFIEKSVKVSKLVHIYTPSQCQLLLLPKHSEANKIARLAYTNAGNGIIALTSNGVHPLWLCPHAANDLDSKVTTQVCPQLWNPNSDLKLIMRNDLNHANGEDLVSCFAITRDRYLISTSGGMTTLFNMMTFEVMLTIFEPPPMVTCLAFYPEDNNTIVVGYDDSSIIIINVRSNDQDQIKLEGHSKRVTSFAFSTALNVLVSADASAQIIVWNSRSWEKLRDRNLQMNVPNVTQILSETQVHFHPDQKKFLVAHNIHLGIYEATELKCFSKWDPNFTTVINQATFSSNGQMVYASFGDGTLAIFDASNFQMHYMIHPSLYLSSISSLKIYPTAIAANPQKPNQFAAGFTDGNVCVFEPKEPSGNWIVPQV 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00675 588 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 399 434 - -
Trre1g00675 588 SMART Lish 2 34 IPR006594 GO:0005515
Trre1g00675 588 SMART ctlh 32 90 IPR006595 -
Trre1g00675 588 ProSiteProfiles Trp-Asp (WD) repeats profile. 399 440 IPR001680 GO:0005515
Trre1g00675 588 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Trre1g00675 588 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 213 586 IPR027728 GO:0006355
Trre1g00675 588 Gene3D - 478 588 IPR015943 GO:0005515
Trre1g00675 588 Gene3D - 222 475 IPR015943 GO:0005515
Trre1g00675 588 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 32 90 IPR006595 -
Trre1g00675 588 SMART WD40_4 483 523 IPR001680 GO:0005515
Trre1g00675 588 SMART WD40_4 348 388 IPR001680 GO:0005515
Trre1g00675 588 SMART WD40_4 392 431 IPR001680 GO:0005515
Trre1g00675 588 SMART WD40_4 541 575 IPR001680 GO:0005515
Trre1g00675 588 SUPERFAMILY WD40 repeat-like 319 577 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00675 Trre-Chr1 5072423 5079478 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00675 - - mtr:112416070 752.281