Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00659 ATGGCTTCTTCTTCAGTTTTCTCCTTAGCTTCCCACACTGCTTCACTTTCGATGCACGATACCAACATCAAGGGAAAGCTCAATCTTGGAACCAACACTTTCAGATTTAACAAGGAAGGAACCAACCCTTTCTCCAATTTAAGGTCTTCTGGACGGATCTCTATGGCTGTTGCGGTTAATGTTTCTCGGTTTGAGGGTATACCGATGGCTCCTCCTGATCCAATTCTTGGTGTTTCTGAAGCATTTAAAGCAGATACAAGTGATGTCAAGCTCAATCTTGGAGTTGGGGCTTACAGAACGGAAGAACTACAGCCATATGTGCTTAATGTTGTTAAGAAGGCGGAGAATCTTATGCTGGAGAGAGGGGAAAACAAAGAGTATCTCCCTATTGAGGGTTTGGCTGCATTTAATAAGGCAACTGCTGAGTTGTTACTCGGAGCAGACAATCCAGCAATCAAACAGCAAAGAGTTGCCACTGTCCAAGGTCTTTCAGGAACTGGTTCTTTGCGATTAGGTGCAGCTCTAATAAATCGGTATTTTCCTGGGGCAAAAGTTGTGATATCAAATCCTACATGGGGTAATCACAAGAATATTTTCAATGATGCTGGAGTACCATGGTCCGAGTACCGATACTATGACCCCAAAACAGTTGGGTTGGATTTTGAGGGCATGATAGAAGATATAAAGTCAGCTCCTGAAGGAACTTTTGTGCTACTTCATGGATGTGCTCATAATCCTACTGGTATTGATCCAACACCAGAACAATGGGAAAATATAGCTGATTTAATTCAACAAAAGAACCACATTCCGTTTTTTGATGTTGCTTACCAGGGTTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCATCTGTAAGATTGTTTGTGGCACGTGGCATGGAGGTTCTTGTAGCTCAGTCATACAGTAAAAATCTTGGTCTTTACGCTGAAAGGGTTGGAGCTATCAATGTCATTTCCTCATCACCAAAATCTGCAACAAGGGTAAAGAGCCAATTGAAAAGGCTTGCCCGACCAATGTACTCTAATCCACCTGTTCACGGGGCTAGGATTGTTGCTAATATTGTTGGGGATCCAACGCTCTTCGGTGAATGGAAAGCAGAAATGGAAATGATGGCTGGAAGGATAAAAACTGTTAGACAGAAGCTATATGATAATATTTCTTCAAAAGACAAGAGTGGAAAGGATTGGTCGTTCATACTTAAGCAGATAGGCATGTTCTCATTCACCGGCTTGAACAAGAACCAGAGTGACAATATGACGAATAAATGGCATATATACATGACAAAGGATGGAAGGATTTCCCTGGCAGGTTTGTCGCTGGCCAAATGTGAATACCTTGCAGATGCTATTATTGATTCGTATCACAATGTCAGCTGA 1395 0.4215 MASSSVFSLASHTASLSMHDTNIKGKLNLGTNTFRFNKEGTNPFSNLRSSGRISMAVAVNVSRFEGIPMAPPDPILGVSEAFKADTSDVKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGENKEYLPIEGLAAFNKATAELLLGADNPAIKQQRVATVQGLSGTGSLRLGAALINRYFPGAKVVISNPTWGNHKNIFNDAGVPWSEYRYYDPKTVGLDFEGMIEDIKSAPEGTFVLLHGCAHNPTGIDPTPEQWENIADLIQQKNHIPFFDVAYQGFASGSLDEDAASVRLFVARGMEVLVAQSYSKNLGLYAERVGAINVISSSPKSATRVKSQLKRLARPMYSNPPVHGARIVANIVGDPTLFGEWKAEMEMMAGRIKTVRQKLYDNISSKDKSGKDWSFILKQIGMFSFTGLNKNQSDNMTNKWHIYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00659 464 PRINTS Aspartate aminotransferase signature 237 256 IPR000796 GO:0006520|GO:0008483
Trre1g00659 464 PRINTS Aspartate aminotransferase signature 268 280 IPR000796 GO:0006520|GO:0008483
Trre1g00659 464 PRINTS Aspartate aminotransferase signature 405 423 IPR000796 GO:0006520|GO:0008483
Trre1g00659 464 PRINTS Aspartate aminotransferase signature 336 361 IPR000796 GO:0006520|GO:0008483
Trre1g00659 464 Pfam Aminotransferase class I and II 90 456 IPR004839 GO:0009058|GO:0030170
Trre1g00659 464 PANTHER ASPARTATE AMINOTRANSFERASE 57 462 IPR000796 GO:0006520|GO:0008483
Trre1g00659 464 Gene3D - 122 363 IPR015421 GO:0003824
Trre1g00659 464 SUPERFAMILY PLP-dependent transferases 62 458 IPR015424 -
Trre1g00659 464 CDD AAT_like 91 456 - -
Trre1g00659 464 FunFam Aspartate aminotransferase 122 363 - -
Trre1g00659 464 Gene3D Aspartate Aminotransferase, domain 1 67 456 IPR015422 GO:0003824
Trre1g00659 464 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 306 319 IPR004838 GO:0003824|GO:0009058|GO:0030170
Trre1g00659 464 FunFam Aspartate aminotransferase 349 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00659 Trre-Chr1 4971032 4974676 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00659 K00811 - gmx:547792 821.617