Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00653 ATGACCCTTTTCTTCAATGCATCATCTTCATCCTCTTCTAATGATTCACAATATCCATTTTTTAACCATGGTGTTAGATCAGCATATTGGCCTGCAGGTGGTGATTTTTTACCTTCTTCAATTAACACAAACTACTTCACTCACGTTTTTTATGCCTTCATTCAACCCGACCCAATTTCATTCAACCTTATAATCACCGAATCCGACCAAAAATGGGCCCATAAATTCACCAACGAGCTCAGCCACCATTACCCGCCTGTGAAAACACTTTTCTCCATCGGAGGAGGTAATAGCAATTCAACACTCTTCTCTGAAATCGCTAGCACAAAACTAAACAGAGAAATCTTCATAAATTCGACAATCCACGTGGCACGAAAATATGGGTTTGATGGTGTTGACTTGGATTGGGAATTTCCTCAAAATGAAAAAGACATGTTTAACCTCGGATTGTTATATGAGGAATGGTATAATGCTTTGTTTGCCGAAGCTATAGTTCTGAGAAAACCACGTTTGCTTTTGACTTCTGCGGTTTATTATAATTCCACAATAAGACTTATTGGTAAAGGGCCGAGATCTTATCCGGCCCAATCTATCAATAAATACTTGGATTGGGCCAGTCCAATGTGTTTCGATTATCACGGCTCATGGGCTAATAATACAGGCTTTAATGCTGCTTTATATGACCCGAAGTCCGAAATTAGTACAAATTTTGGAATTAGGTCATGGATCAAATCGGGTGTACGACCCGAAAAGTTGGTTATGGGTTTGGCTTTATACGGGAGGACGTGGGAGCTGAAGAATCGACACGTTCACGGGGTAGGAGCCGATGCAGTGGGACCCGCAGTTGACACCGATGGTAGTATGAATTATAATGAAATATTGAAATTTAATAAAGAGAGTGGTGCTAATGTTGTGTATGATAAGGTTGCTGTGTCTTTTTATTCTTATGCGGGTACTACTTGGATTGGGTATGATGATGTGCCATCTATAACCACTAAGGTTAGGTTTGCTAAATCATTGGGCTTAAAGGGATATTTCTTTTGGGCTCTTGGGAAGGACAAGGATTGGACAATCTCAAGACAAGCTTCAAATGTATGGGGACACTGA 1107 0.4029 MTLFFNASSSSSSNDSQYPFFNHGVRSAYWPAGGDFLPSSINTNYFTHVFYAFIQPDPISFNLIITESDQKWAHKFTNELSHHYPPVKTLFSIGGGNSNSTLFSEIASTKLNREIFINSTIHVARKYGFDGVDLDWEFPQNEKDMFNLGLLYEEWYNALFAEAIVLRKPRLLLTSAVYYNSTIRLIGKGPRSYPAQSINKYLDWASPMCFDYHGSWANNTGFNAALYDPKSEISTNFGIRSWIKSGVRPEKLVMGLALYGRTWELKNRHVHGVGADAVGPAVDTDGSMNYNEILKFNKESGANVVYDKVAVSFYSYAGTTWIGYDDVPSITTKVRFAKSLGLKGYFFWALGKDKDWTISRQASNVWGH 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00653 368 PANTHER CHITINASE 27 365 - -
Trre1g00653 368 FunFam Class V chitinase CHIT5b 258 324 - -
Trre1g00653 368 SUPERFAMILY Chitinase insertion domain 259 324 IPR029070 -
Trre1g00653 368 Pfam Glycosyl hydrolases family 18 29 353 IPR001223 GO:0005975
Trre1g00653 368 SUPERFAMILY (Trans)glycosidases 28 355 IPR017853 -
Trre1g00653 368 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 24 368 IPR001223 GO:0005975
Trre1g00653 368 SMART 2g34 24 353 IPR011583 GO:0008061
Trre1g00653 368 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 129 137 IPR001579 GO:0004553|GO:0005975
Trre1g00653 368 Gene3D Glycosidases 39 354 - -
Trre1g00653 368 Gene3D - 258 324 IPR029070 -
Trre1g00653 368 CDD GH18_plant_chitinase_class_V 25 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00653 Trre-Chr1 4907992 4909360 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00653 25 366 Glycoside Hydrolase AT4G19810 41.570 2.10e-89 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00653 K01183 - gmx:100787511 525.783