Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00631 ATGGCTAAACATTCAATGGCTTTGCCACAAGGTGGTGCTATTGGAAACGAGAGTATTGGTCAGAGATTGATTAAGAGAAGGAGATTGGTTTCTGGGGTTGGATTGTATTTGAATAGTAAATCTAAGTTTAGTTTTCCAATTAAAGATCTAAGGGGTAAATCTTGTTTTCCTGAGGGATTAAGGGGTTTGAACAATTTAGGTAGTACTTGTTTTATGAATTCTGTGTTGCAAGCATTGTTACATGCACCTCCTTTCAGGGACTATTTCTTGAGTGGTGGACATAGTTTGGAAGATTGTAAGAGAAGAACGATGGATCGGTTGTGTTTGATTTGTGATATCAATGCTGTTTTTTCGGCTATGTATTCGGGTGATCGAAATCCATATAGCCCTGCTAAGTTTCTCTACAGCTGGTGGCAGCATTCGGCAAATTTAGCGAGTTACGAGCAGCAGGATGCTCACGAGTTTTTCATTTCGATGTTAAATACAATCCATGAGAAAGAGGGCATAACAAGGAACGGAAGCAAAGGAAATGGTGGAGATTGTCAATGCATTGCTCACAGAGTTTTTTATGGACTTTTGAGATCAGATGTTACCTGTATGGCCTGTGGATTCATCTCAACAACCTATGACCCTTTTTTGGACATTTCACTTAACTTGGACATTAATATCTCTTTGACAGAAAAGGCTAAAAAAGTTACCAAATTGAAAGAGGATGACAGCATGTCTACACTTCTCGGTTGTTTGGATTTGTTCACTCGGCCAGAGAAGTTAGGTTCGGACCAGAAACTTTACTGCCAAAAATGTCAGGAAAGGCAAAACTCATTGAAACAAATGTCAATTACAAAGCTCCCTCTTGTGCTTACTTTGCACGTAAAACGATTTGAGCATTCTTTTGTTAAGAAGTTGTCGAGAAAGATTGACCGGTACCTACAATTTCCATTCTCCTTGGACATGACTCCATATTTGTCCTCTTCTATCCTTAGAGCCAGATATGGAAATAGAATTTTTAATTTTGGAAATGAATCTGATACATTTTCCAAGTTCGAGATTTTTGCAGTGGTGACACATTCAGGGACGCTCGAGTCTGGCCATTATGTTTCTTTTGTACGATTAAGGAAGCAATGGTACAGATGCGACGATGCTTGGATCACCGAGGTTGATGAGGCAACAGTTAGAGCTTCACAATGTTACATGATCTTTTATGCACAGAAAGCTTTGTTCAATAACACAAGTGAAGATCTGAGTCACCTTCCAAATTCACCTGGAAGAGAGGTTTTCATTCCTATTGCTGGTTGCTAG 1299 0.3934 MAKHSMALPQGGAIGNESIGQRLIKRRRLVSGVGLYLNSKSKFSFPIKDLRGKSCFPEGLRGLNNLGSTCFMNSVLQALLHAPPFRDYFLSGGHSLEDCKRRTMDRLCLICDINAVFSAMYSGDRNPYSPAKFLYSWWQHSANLASYEQQDAHEFFISMLNTIHEKEGITRNGSKGNGGDCQCIAHRVFYGLLRSDVTCMACGFISTTYDPFLDISLNLDINISLTEKAKKVTKLKEDDSMSTLLGCLDLFTRPEKLGSDQKLYCQKCQERQNSLKQMSITKLPLVLTLHVKRFEHSFVKKLSRKIDRYLQFPFSLDMTPYLSSSILRARYGNRIFNFGNESDTFSKFEIFAVVTHSGTLESGHYVSFVRLRKQWYRCDDAWITEVDEATVRASQCYMIFYAQKALFNNTSEDLSHLPNSPGREVFIPIAGC 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00631 432 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 41 403 - -
Trre1g00631 432 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 62 77 IPR018200 GO:0004843|GO:0006511
Trre1g00631 432 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 61 404 IPR028889 -
Trre1g00631 432 SUPERFAMILY Cysteine proteinases 58 402 IPR038765 -
Trre1g00631 432 Gene3D Cysteine proteinases 55 408 - -
Trre1g00631 432 FunFam Ubiquitinyl hydrolase 1 55 409 - -
Trre1g00631 432 Pfam Ubiquitin carboxyl-terminal hydrolase 61 401 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00631 Trre-Chr1 4776988 4779000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00631 62 403 Miscellaneous Gene Families AT2G24640 30.199 4.77e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00631 K11366 - gmx:100806347 706.057