Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00556 ATGATGATGAAACCAAAATTTGATTCTGAAAATAAAGATAATGCTGATGATGATGTTGTTGTTGAAACTGAAACTGAAACTGATTGGAAAAATGGTCAACAAGAATTACTTCGTGATATCGAAGAATTAAGCAATGCTCTTTACTTGAACAATACCCCTTTTAAGCCTTCCACACTATCCTTAGTCCATAATAGATCTAAGTCTGCTGAAAATACCCGTTTGTCGAAACCTCAACAACTTAACTCAACCCCGAGATTTGTAAGTGAGGATCTATTGATAAGAGACAAGAAGTTGTCTTTAGGATGGAATTGGAAGAAGCCTTTGAAAGCTTTGACTCGCATCGGTTCTCGAAAGTTTGTTTGTTGCTTTAAACTTCATGTTCATTCAATCCAAGGACTGCCTTTGAGTTTTAACGGCGTTAGATTATCTGTGCATTGGAAAAGGAAAAACAGCATTTTGCAGACATGTCCATTGAGGGTATTGCAGGGTTCTGCGGAGTTCGATGAAACTTTGATACATAGATGTACTGTTTATGGCAGCCGCACCGCGTCTGGTCATGCTGTTAAGTATGATTCCAAGCGTTTCTTGATTTATGCTTCTATTGTAGGCGAACCTGAATATGACACTGGGAAATATCAAGTTGATCTCACAAGGCTTTTACCTCTGAGTTTAGATGAGTTATGGGGCGATAAAAGTTTAGGGAAATGGAATACGAGTTTTAGCTTGGTTGGAAAAGCTTTAGGAGCTAGAATAAATGTTAGTTTCAGTTATCAAATTATGAAGGATGAATTAATGAGATTTGGTGGTAGTAATGGGAATGTTGTTAAACTTATTAACTTGAAGACCGGTCCAAGCTGCCTCGACGATGTTAGTGGTTTCAGTCCCAACAATAGGGACATAAAGGATCGGCAGATTCAAAATGATGCGGTGTTATCGAATGAAGCAGTGATGAATACTGGCTCAGGCTTTTCTAAATCAATCACTTTCCTATATCAAAAGCTTGATGAGGGGAACTTTGATAATTCAACATGGGCAGACTCAGAGTCATCTCAAGGGTCGAATCTATACGTATCTGATGACACTGAATATTCCATCAGTGAACAAGGAGTAGAAATATCAGAAGAGGATTCGTTCGAATTTGATCAAACAGGAATTCAAATAGTCGATATGTCGACAATTGAAATCATTAATGTGGATGAGATTCTTAATGATGCTGACACGTTTGTTGACAAAAATGCAAGATGTGATTCATTGGATAACGTATATTCTAGGAATGTAAATGTTGATGTGGCAGATAAAGGCAAGCATAAATTCAGTCTTTCATCTGTCGATCTACCCTTCATGAAGGTTGAGGATTCAGTTCCTGAGACATCAGAGCTTCTTGATCAAGAAGAACACTACTTGAGTGTTGAATCAAATTATAAAGCACATAAAAAGTCACATAGCTTGGATGACATCATTATTGACTCTGTCGCGAGTGATTTCTTAAAGACACTGGCATTGGAGAGCGATTCATTTCGCTCAAGCTCTGATGGTGATCCCTTTTCTCCTAGAGAGCATCTTTTAAGACAGTTTGAAAATGAGGCTCTAGCTTCAGATAACTTCATTTTTGATTTTGATGCAATCGAGGAGGAATTGGGGGAAGATACACTTGGACACAACTATGGGAATTATGCTGCTGTGGATTCTGATTTATCTTTACTTATCGGTGTTGCCGAAGAGGAGTATGAAAGGGAAAATCAATCATTAATACAGAGAAGGAAAGCCAAGATTATTGAAGATCTCGAAACTGATACATTAATGCAACAATGGGGTTTAGATGAGAGGGACTTTGAAAATTCTCCAAGAACATGGGCTGGTGGATTTGGAAGTCCAATTGAACTATCCGACGAAGAACCATCCATATTACCATTACCATCAATTGGAGAAGGGCTTGGTTCGTTTGTTCAAACAACAAATGGCGGGTTTTTGAGGTCCATGTGTCCTTCCCTCTTCAAAAATGCTAAGAATTGTGGGAACCTCATCATTCAAGCATCTAATCCGATCGTTCTACCTGCGAAAATGGGTAACGATATATTGGATATACTTCTGCACATGGCATCTGCTAGAGTTCAAGAGCTGCATGATCACATCTCTAAATTAATGCCTTTGCAAGATATCACTGGAAAATCCATTAAGCATATTGTGTCGAACGCTGACACCAACACGGAAGCTCCAGAAAGGAAGGGATCATGGCAGCACGATTTCTTTGAAGAATTTCCAAGTAGTTATTTAATAGATGAAGACAAATGCTTGGACTCTATGTCTCTAGAAGCTATAGCTCCTATGAGTATTAATAAGATTGAAGCCCTTTTAATAGAAGGGTTGAGAATTCAATCTGGCATGTCAAATGAGGAGGCACCATCAAACATTCATGGAGAGATCACCAATGATCTCGATGGTTTGATGGGTCTGTCTGTAACATTGGATCAATGGTCGAGACTTGATTCTGGCATCATTCAAGGAAAAAATAATTTGGGACAAATTTTGAAGACCCTTAAAGCACACAATTATAAAATCACTGACTTAGATAATGAAGGGTTGAAAAGTGCCGCAGATAATGCGGAAATAGATGACAAGCAGCACAGATATTTGGGAAATCACGTAACAGTTGCTTTTATGATCCAGCATAGAGATCCTCTAAGAAATTATGAAGCAGTTGGAGTTCCAATGCTGGTTTTAACTCAGGTGGAAAGAGTTGACTGCAATTTTGTTGAAAATGCAGATATAGATAACGAAACCCTTCAATCTAGATTCAAAATCAAGGAGATTCATCTTGCAGGTGTCCTTAACAAAGGTGGAAACCGGCAAGTTTGGGGCACTGCGTCTCAGCAACAATCCGGGTTGCGTTGGTTGCTTGCGAGTGGCATGTGTAGTAGTACTGTCAAACATTCTTCTTCAAAATCAAGGTCGATTATTGTTAGACCATCTTCGCTGTTAACCAACAAGTCGATGAATCAGGATATCTTTTGGAGCATTTCTTGTGTTAAAGATAACATGGATATTAATGCACACATTAGGAATGTTGATATCATCTTCCCAAAGTGA 3087 0.3861 MMMKPKFDSENKDNADDDVVVETETETDWKNGQQELLRDIEELSNALYLNNTPFKPSTLSLVHNRSKSAENTRLSKPQQLNSTPRFVSEDLLIRDKKLSLGWNWKKPLKALTRIGSRKFVCCFKLHVHSIQGLPLSFNGVRLSVHWKRKNSILQTCPLRVLQGSAEFDETLIHRCTVYGSRTASGHAVKYDSKRFLIYASIVGEPEYDTGKYQVDLTRLLPLSLDELWGDKSLGKWNTSFSLVGKALGARINVSFSYQIMKDELMRFGGSNGNVVKLINLKTGPSCLDDVSGFSPNNRDIKDRQIQNDAVLSNEAVMNTGSGFSKSITFLYQKLDEGNFDNSTWADSESSQGSNLYVSDDTEYSISEQGVEISEEDSFEFDQTGIQIVDMSTIEIINVDEILNDADTFVDKNARCDSLDNVYSRNVNVDVADKGKHKFSLSSVDLPFMKVEDSVPETSELLDQEEHYLSVESNYKAHKKSHSLDDIIIDSVASDFLKTLALESDSFRSSSDGDPFSPREHLLRQFENEALASDNFIFDFDAIEEELGEDTLGHNYGNYAAVDSDLSLLIGVAEEEYERENQSLIQRRKAKIIEDLETDTLMQQWGLDERDFENSPRTWAGGFGSPIELSDEEPSILPLPSIGEGLGSFVQTTNGGFLRSMCPSLFKNAKNCGNLIIQASNPIVLPAKMGNDILDILLHMASARVQELHDHISKLMPLQDITGKSIKHIVSNADTNTEAPERKGSWQHDFFEEFPSSYLIDEDKCLDSMSLEAIAPMSINKIEALLIEGLRIQSGMSNEEAPSNIHGEITNDLDGLMGLSVTLDQWSRLDSGIIQGKNNLGQILKTLKAHNYKITDLDNEGLKSAADNAEIDDKQHRYLGNHVTVAFMIQHRDPLRNYEAVGVPMLVLTQVERVDCNFVENADIDNETLQSRFKIKEIHLAGVLNKGGNRQVWGTASQQQSGLRWLLASGMCSSTVKHSSSKSRSIIVRPSSLLTNKSMNQDIFWSISCVKDNMDINAHIRNVDIIFPK 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00556 1028 ProSiteProfiles C2 NT-type domain profile. 111 259 IPR019448 -
Trre1g00556 1028 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 30 1028 IPR039614 -
Trre1g00556 1028 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 116 258 IPR019448 -
Trre1g00556 1028 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00556 Trre-Chr1 4200650 4203822 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00556 - - gmx:102659507 1120.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00556 1 4200650 4203822 Trre1g00556 1 4200650 4203822 ECH