Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00554 ATGGATTTGAGATTGATGGGTTTGGATTCTCCAGTTCTTCATGCTCTCCACCAAATGATGGATCTTTCAGACGAAACATCTTCTGACAAGGCATCACACAATGCTCCAACAAGGTCCTACGTCAGAGACGCGAAGGCAATGGCTGCAACTCCTGCAGACGTGAAGGAATATCTGAATTCATACGTGTTTGTGATCGACATGCCGGGGTTGAAATCTGGTGACATAAAGGTTCAGGTTGAAGATGACAATGTTCTTGTGATAAGTGGAGAGAGGAAAAGGGAAGAAGAGAAAGAAGGTGTTAAGTATTTGAGAATGGAGCGAAGGGTTGGAAAATTTATGAGGAAATTTGTGCTTCCAGAAAATGCTAATACTGATGCTGTTTCTGCTGTGTGTCAGGATGGAGTGCTCAGTGTTTCTGTTGAGAAATTGCCTCCTCCTCAGCCTAAGAAGCCTAGAACCATTGAGGTTAAGATTGCTTGA 480 0.4333 MDLRLMGLDSPVLHALHQMMDLSDETSSDKASHNAPTRSYVRDAKAMAATPADVKEYLNSYVFVIDMPGLKSGDIKVQVEDDNVLVISGERKREEEKEGVKYLRMERRVGKFMRKFVLPENANTDAVSAVCQDGVLSVSVEKLPPPQPKKPRTIEVKIA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00554 159 Pfam Hsp20/alpha crystallin family 54 157 IPR002068 -
Trre1g00554 159 Gene3D - 10 158 IPR008978 -
Trre1g00554 159 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 14 157 IPR031107 -
Trre1g00554 159 SUPERFAMILY HSP20-like chaperones 20 151 IPR008978 -
Trre1g00554 159 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 43 157 IPR002068 -
Trre1g00554 159 FunFam 17.3 kDa class II heat shock protein-like 11 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00554 Trre-Chr1 4192200 4192679 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00554 K13993 - jre:108984742 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00554 1 4192200 4192679 Trre1g00554 1 4192200 4192679 ECH