Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00549 ATGGCTTCTGTCTCAATGTCTTTACCACTAACTCAAGCTACACACAAAAACCTCAAAAATCCTTCTTCCAACACACCCTTTTTGAAACCATTACCCTTTCCACAAGCAAAGAAGACACTAGTCAACAATTCATCATCAAAATCCAATCTTGTTGGAATTCAAGCATCATTGAAAGACAAAACAGTTAAGGGTCTAACAGCTTTTGCATTAACTGCTTCTATGGTTTTACCAGAAGCTGCTCATGCAGCTGGAAATGACTTTTCACCTTCTCTTAAAAACTTTTTGCTTAGTATTGCTGCTGGTGGTGTTGTTCTTACAGCTATATTGGGTGCTGTTATTGGTGTTTCCAACTTTGATCCTGTTAAGAGAACTTAA 375 0.376 MASVSMSLPLTQATHKNLKNPSSNTPFLKPLPFPQAKKTLVNNSSSKSNLVGIQASLKDKTVKGLTAFALTASMVLPEAAHAAGNDFSPSLKNFLLSIAAGGVVLTAILGAVIGVSNFDPVKRT 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00549 124 MobiDBLite consensus disorder prediction 1 29 - -
Trre1g00549 124 Gene3D Single helix bin 87 124 - -
Trre1g00549 124 PANTHER OS07G0673550 PROTEIN 2 124 - -
Trre1g00549 124 MobiDBLite consensus disorder prediction 1 26 - -
Trre1g00549 124 FunFam Photosystem II psbX protein 86 124 - -
Trre1g00549 124 Pfam Photosystem II reaction centre X protein (PsbX) 88 123 IPR009518 GO:0009523|GO:0015979|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00549 Trre-Chr1 4148349 4148723 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00549 - - tpra:123916525 226.868