Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00548 ATGGGAGAAGAGGCTCCAGAAGTGTTGTATGTTAATGGTTCCTCAAAAGTTGTTCCTGAACCTCAACAAAACCATGTCAACAACGTTAATGGTTCTGATTCTGATACATGGTATGAGGAAGTCATTGATGATGATCTCAAATGGTCTTTTAAACTCAACAGTGTGCTCCATAAAGCTATTAGTGAATATCAGGACATTGCTCTCTTAGATACAAAGCGTTTTGGAAAGGCCTTGGTGCTTGATGGGAAGATGCAGAGTGCTGAAGCAGATGAATTCATTTATCATGAATGCTTGATTCATCCCCCTCTTTTATGCCATCCCAACCCAAAGACAGTGTTTATAATGGGAGGTGGTGAAGGTTCTGCAGCTAGGGAAGCTCTCAAGCACAAGTCAATGGACAAAGTAGTTATGTGTGATATTGACAAGGAGGTGGTAGATTTCTGCCGAAAATTCCTTGTTGCAAATAAGGAGGCATTTGCTAACAAGAAGCTCGGCCTTGTCATCAATTGTGCTAAGGCTGAATTAGAGAAGAGAAATGAGAAGTATGATGTGATTGTTGGAGATTTGGCTGACCCCCTTGAAGATGGGCCTTGCTATCAACTGTACACTAAGGACTTCTATGAGAATGTTGTGAAGCCCAAACTCAATAAGAATGGCATTTTTGTGACCCAGGCTGGACCAGCAGGAATCTTCTCACACAAAGAGGTCTTTACCTCTATACACAACACTGTAAAACAGGTCTTCAAATATGTGGTGGCATATTCTACTCATGTACCATCATTTGCTGATTCATGGGGATGGGTTATGGCTTCAGACCAACCAATATTGATTGATGCTGTTGAAATGGACAAAAGAATTGAAGCAAGAATAGATGGAAAATTGCTCTATCTAGATGGTGTTTGGTTCCATTCATCTACCATCATGAACAAGGCTGTGTCCAAATCGCTGCAGAATGAAACTCATGTGTACACTGAAGATAATGCTAGGTTTATTCCTGGACATGGCATACTCTAA 1014 0.4093 MGEEAPEVLYVNGSSKVVPEPQQNHVNNVNGSDSDTWYEEVIDDDLKWSFKLNSVLHKAISEYQDIALLDTKRFGKALVLDGKMQSAEADEFIYHECLIHPPLLCHPNPKTVFIMGGGEGSAAREALKHKSMDKVVMCDIDKEVVDFCRKFLVANKEAFANKKLGLVINCAKAELEKRNEKYDVIVGDLADPLEDGPCYQLYTKDFYENVVKPKLNKNGIFVTQAGPAGIFSHKEVFTSIHNTVKQVFKYVVAYSTHVPSFADSWGWVMASDQPILIDAVEMDKRIEARIDGKLLYLDGVWFHSSTIMNKAVSKSLQNETHVYTEDNARFIPGHGIL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00548 337 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 36 316 IPR029063 -
Trre1g00548 337 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 30 327 - -
Trre1g00548 337 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 35 272 IPR030374 -
Trre1g00548 337 CDD AdoMet_MTases 116 224 - -
Trre1g00548 337 Gene3D Vaccinia Virus protein VP39 88 335 IPR029063 -
Trre1g00548 337 NCBIfam fused MFS/spermidine synthase 108 261 - -
Trre1g00548 337 FunFam Polyamine aminopropyltransferase 88 335 - -
Trre1g00548 337 Pfam Spermidine synthase tetramerisation domain 37 88 IPR035246 -
Trre1g00548 337 Gene3D Spermidine synthase, tetramerisation domain 35 87 IPR037163 -
Trre1g00548 337 Hamap Polyamine aminopropyltransferase [speE]. 36 317 IPR001045 GO:0003824
Trre1g00548 337 Pfam Spermine/spermidine synthase domain 91 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00548 Trre-Chr1 4143522 4147505 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00548 K18787 - gmx:100784972 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00548 1 4143522 4147505 Trre1g00548 1 4143522 4147505 ECH