LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g00546	ATGATAGCTTACCTTGAACACTTCGTTCACGGAAACGACACAGAATCAACTCCAAACGACGACGTTTCTTCCCTCCAAGGTTCTTTCCATTTCTCCCCAATTTCCATCGCAACCAAAGACTTCGGCGGCATGAAATCCTCCACTCCCCTCGCCGTAATCCGCCCTTACTCAACCTCCGACGTCGCAAGAGCGGTCAAAGCAGCAACAACAACCACAAACCTAACCGTCGCGCCACGTGGCAACGGTCATTCAATCAACGGCCAAGCCATGGCTGAAAAAGGATTAGTCCTCGACATGCGCGCCACCGCGGAAGAACATTTTCAACTTCTTTATCACGACGGTGTTCCATACGTCGACGTTTCCGGAGGGGCATTATGGGAAGAAGTGTTGAAACGCTGCGTTTCACAGTTTCAACTTGTTCCGAGATCGTGGACTGATTATCTCGGGTTAACGGTCGGTGGAACGCTTTCTAACGCCGGTGTTAGTGGTCAGACTTTCCGTTACGGTCCTCAAACGGCAAACGTAACGGAATTAGAAGTCGTTACTGGTAAAGGTGATACTTTAGTTTGTAATGAAAATCAAAATTCAGAACTTTTTTTCGCAACGCTTGGTGGTCTTGGTCAATTTGGTATCATCACTAGAGCCAGAATCGTTCTTCAACAAGCCCCTGATATGGTGAGGTGGATAAGGGTGATTTACTCGGAATTTGAGGATTTTACCAAAGATGCAGAGTGGCTGGTGACACTACCAGAAGGTGACGGTTTTGATTACGTGGAAGGATTCGTTGTAGCTAACAATGATGATCCTTGTAATGGATGGCCCACAGTTCCGATGGGTTCGAACCAAGTCTTCAACCCGGTTCATGTTCCTTCTTCAGCTGGACCGGTTCTCTATTGCTTAGAACTTGCTCTTCACTATCGTAAAACCACTCGTTCATCCGATGTTAACATGAAAGTGGATAGATTGCTTGGAGGGTTGAGATATGTTGAGGGTATAAAGTTTGAGGATGATGTGAAATACGTGGATTTTTTGCTACGTGTAAAGAGTGTGGAAGAGGATGCTAAAGCCAAAGGCATATGGGATGCACCTCACCCATGGCTCAACATGTTTGTGTCCAAGTCCGACATAGCTGATTTTGATCGTGAAGTATTCAAGAAAATCCTCAAACATGGTGTTGGTGGCCCCATTCTAGTTTATCCACTTTTGCAAAGCAAGTGGGATGATAGACACTCGGTAGTGGTGCCAGACAGCAACATTTTCTACATAATAGCATTACTCCGTTTTATTCCACCACCACCAAAGGGACCACCTACTGATAAATTGGTGTCACAAAACAATGCAATTATTCAATTGTGCTCCAACAGAGGATTTAATTTCAAGTTATATCTTCCTCACTACTTGTCACAAGAGAATTGGATGCGACACTTTGGTGATAAGTGGACTAGATTTGTCCAGAGAAAACAAAATTTTGATCCAATGGCTATTCTTGCACCTGGACAGAAAATATTTTCCAGAAACCAACTTAAATAA	1530	0.4438	MIAYLEHFVHGNDTESTPNDDVSSLQGSFHFSPISIATKDFGGMKSSTPLAVIRPYSTSDVARAVKAATTTTNLTVAPRGNGHSINGQAMAEKGLVLDMRATAEEHFQLLYHDGVPYVDVSGGALWEEVLKRCVSQFQLVPRSWTDYLGLTVGGTLSNAGVSGQTFRYGPQTANVTELEVVTGKGDTLVCNENQNSELFFATLGGLGQFGIITRARIVLQQAPDMVRWIRVIYSEFEDFTKDAEWLVTLPEGDGFDYVEGFVVANNDDPCNGWPTVPMGSNQVFNPVHVPSSAGPVLYCLELALHYRKTTRSSDVNMKVDRLLGGLRYVEGIKFEDDVKYVDFLLRVKSVEEDAKAKGIWDAPHPWLNMFVSKSDIADFDREVFKKILKHGVGGPILVYPLLQSKWDDRHSVVVPDSNIFYIIALLRFIPPPPKGPPTDKLVSQNNAIIQLCSNRGFNFKLYLPHYLSQENWMRHFGDKWTRFVQRKQNFDPMAILAPGQKIFSRNQLK	509

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g00546	509	Gene3D	-	37	504	IPR016167	-
	Trre1g00546	509	PANTHER	GULONOLACTONE OXIDASE	19	504	-	-
	Trre1g00546	509	Gene3D	-	99	224	IPR016169	-
	Trre1g00546	509	Gene3D	-	226	462	IPR016170	-
	Trre1g00546	509	Pfam	FAD binding domain	49	190	IPR006094	GO:0050660
	Trre1g00546	509	SUPERFAMILY	FAD-linked oxidases, C-terminal domain	223	503	IPR016164	GO:0003824\|GO:0050660
	Trre1g00546	509	ProSiteProfiles	PCMH-type FAD-binding domain profile.	45	222	IPR016166	GO:0071949
	Trre1g00546	509	Pfam	Cytokinin dehydrogenase 1, FAD and cytokinin binding	223	503	IPR015345	GO:0009690\|GO:0019139\|GO:0050660
	Trre1g00546	509	SUPERFAMILY	FAD-binding/transporter-associated domain-like	35	219	IPR036318	GO:0050660

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g00546	Trre-Chr1	4098402	4105157	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g00546	K00279		-	gmx:100783374	840.876