Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00545 ATGAACAACAACGAGGATATTTTCGGAAACGCTTCTGAAGATGAAGATGAATCCGAAGAGGCTAAATTTTTCCAAGGTTTTGGTTCGTGGCCGGGTACACGGAGGTCGGAGGGTGAAAGTAGCTCTGTTAACGCCGGTTTAGTTCCGGTTTCCCGTCCGGAAAGCCCTGTTGCTGACGAGAACCGTGATTCGTCTCACAAGCGCGCTAAGTTCTACAATGAGTGTAACTTTGACGACCTAGCGTCTTCAAGTAAAGCAAAATACTCCATGGATTACGGGGATTTTGACGTTTCTCATCCACCTAGTAATGTTGCTTGTTACGATGATTCTGCGTTGGGGTGTATTGACGAGGATGGTAATTGTGTGGAAAACGGTGAAGGGAATGATTCAGAACTAGAAGAACAAGAGGTTGTCAGGATGGATCTTACGGATGACCTGCTGCATATGGTTTTCTCATTTTTGGATCAGACCAATCTCTGCAGAGCTGCTAGAGTTTGTAAGCAGTGGCGAGCTGCTAGTACTCATGAAGATTTTTGGAGGAGTTTGAATTTTGAAAATCGGGACATATCTGAAGAACAATTTGAGGACATGTGTAGGCGTTATCCTAATGCTACAGCATTGAGCATATCAGGACCTTCTATTTATTCGCTTGTCATGAAGGCAATCTCTATGTTAAGGAATCTCGAGGTTTTAACATTGGGAAGAGGACAGATAGGGGATGCTTTTTTTCTTTCTTTACCTGATTGTTCTATGTTGAGAAAATTGAAAATCAATGATTCTACACTTGGCAATAGTATTCAGGAGATATCTGTTGTTCATGAGAGATTGTGCCATCTTGAATTAACAAAATGTCGTGTCATGCGAATACAAGTCAGGTGCCCACAGCTTAAAACTATGTCGCTGAAGCGCAGTAACATGGCACAAGTTGTGCTGAATTGTCCTCTTTTGCATGAACTCGATATAGGCTCTTGCCACAAACTTCCTGATGCTGCTATTCGTGCTGCTGCAACTTCATGCCCTCAACTAGTGTCACTGGACATGCGTAATTGTTCTTGTGTCAGCGATGAAACACTACGTGAAATAGCACAGCATTGTCCTAATCTTGGTTTTCTTGATGCGTCATACTGCCCAAACATATCTTTGGAGTCTGTTCGACTCCCAATGTTGACAATTCTACGGCTTCATAGCTGTGAGGGCATCACTTCTGCATCAATGGCTGCAATAGCACACAGTTCTATGTTAGAGGTTTTGGAGCTTGACAATTGTGGTCTATTGACTTCGGTGTCGTTGGATCTTCCCCGTTTGCAAAATATTAGATTGGTGTACTGTCGCAAATTAGCAGATTTGAACTTGAGGGCTACATCGCTTTCTTCTATACAAGTGTCGAACTGCTCTGTACTTCACCGGATCAATATCACTTCAAATTCACTTCAAAAATTAGCGCTGCAAAAGCAGGATAGCTTAACTACATTAGCACTGCAATGCCAATCTTTACAAGAAGTGGACCTCTCTGAGTGTGAATCTTTGACAAATTCTATATGTGATGTTTTTAGTGACGGTGGAGGATGCCCTATGTTGAAATCACTAGTTCTTGATAATTGTGAGAGCTTGACTTCAGTTCGCTTCATCAGCACCTCGTTAATTAGTCTTTCCCTTGGTGGTTGCCGAGCAATTACTACTCTTGAGCTAACCTGCCCTAATCTTGAGAAGGTCATTTTGGATGGCTGTGATCATTTGGAAAATGCATCATTTTGCCCTGTTGGTCTCCGATCTCTCAATTTAGGAATATGCCCAAAATTAAACATACTCCGCATTGAAGCGATGCTAATGGTCTCACTTGAGTTGAAAGGATGTGGTGGACTGTCTGAAGCATCCCTTAATTGTCCTCTCTTGACATCTCTGGATGCTTCCTTTTGCAGCCAGCTCACTGATGAATGCTTGTCTGCAACAACCCGTGCATGTCCTCTAATTGAGTCATTGATATTGATGTCATGCCCATCAATTGGGTTAGACGGACTCTGTTCCCTGCATTGGCTCCCAAATTTAGCTCTACTTGATTTATCATACACTTTCTTGGTGAATCTGCAGCCTGTTTTTGACTCCTGTTCACAACTAAAGGTATTAAAGTTGCAGGCATGCAAATATCTCACCGACTCATCACTTGAACCTCTTTACAAGGGGGGCGCTTTGCCAGCACTTCAGGAGTTGGACTTGTCCTATGGAACTTTGTGTCAGAAAGCCATTGAAGAGCTTCTTTCTTGTTGCACTCACCTTACACGTGTGAGTTTGAATGGCTGTGTGAATATGCATGACTTAAACTGGGGGTACAGTCGAGGGAAGTTTCCTGAGTTACCTGGCATAAGTGTCCTTTCCACTGCAAGTTCCTATGATAATACCCATGTGTCAAATGAGCAACACACTCGATTACTTCAGAACCTCAACTGTGTTGGCTGTCCAAATATAAGGAAGGTTTTCATCCCATCAACAGCAAACTGTTCTCATTTATTATTTTTAAACCTTTCTCTGTCAGCTAATTTGAAGGAGGTTGATGTTGCTTGTCTCAACCTATGCTGGCTTAATTTAAGCAACTGTTCATCATTGGAGGTTTTGAAGCTAGATTGTCCGAGATTGACCAATCTATTCCTTCAGGCGTGCAATATCGACGAGGAAGCTGTTGAAGCTGCTATATCAAAATGCACTATGTTGGAGACTCTCGATGTTCGCTTTTGTCCTAAGATAAGCTCAATGAGCATGGGAAGGCTCCGTGCAGCATCTTCTGGTTTAAAGCGTATATACAGCAGTTTGTCAACTTCATCAGCGTGA 2823 0.4261 MNNNEDIFGNASEDEDESEEAKFFQGFGSWPGTRRSEGESSSVNAGLVPVSRPESPVADENRDSSHKRAKFYNECNFDDLASSSKAKYSMDYGDFDVSHPPSNVACYDDSALGCIDEDGNCVENGEGNDSELEEQEVVRMDLTDDLLHMVFSFLDQTNLCRAARVCKQWRAASTHEDFWRSLNFENRDISEEQFEDMCRRYPNATALSISGPSIYSLVMKAISMLRNLEVLTLGRGQIGDAFFLSLPDCSMLRKLKINDSTLGNSIQEISVVHERLCHLELTKCRVMRIQVRCPQLKTMSLKRSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLDMRNCSCVSDETLREIAQHCPNLGFLDASYCPNISLESVRLPMLTILRLHSCEGITSASMAAIAHSSMLEVLELDNCGLLTSVSLDLPRLQNIRLVYCRKLADLNLRATSLSSIQVSNCSVLHRINITSNSLQKLALQKQDSLTTLALQCQSLQEVDLSECESLTNSICDVFSDGGGCPMLKSLVLDNCESLTSVRFISTSLISLSLGGCRAITTLELTCPNLEKVILDGCDHLENASFCPVGLRSLNLGICPKLNILRIEAMLMVSLELKGCGGLSEASLNCPLLTSLDASFCSQLTDECLSATTRACPLIESLILMSCPSIGLDGLCSLHWLPNLALLDLSYTFLVNLQPVFDSCSQLKVLKLQACKYLTDSSLEPLYKGGALPALQELDLSYGTLCQKAIEELLSCCTHLTRVSLNGCVNMHDLNWGYSRGKFPELPGISVLSTASSYDNTHVSNEQHTRLLQNLNCVGCPNIRKVFIPSTANCSHLLFLNLSLSANLKEVDVACLNLCWLNLSNCSSLEVLKLDCPRLTNLFLQACNIDEEAVEAAISKCTMLETLDVRFCPKISSMSMGRLRAASSGLKRIYSSLSTSSA 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00545 940 FunFam F-box/LRR-repeat protein 15 134 383 - -
Trre1g00545 940 Gene3D Ribonuclease Inhibitor 384 772 IPR032675 -
Trre1g00545 940 SUPERFAMILY F-box domain 141 172 IPR036047 GO:0005515
Trre1g00545 940 MobiDBLite consensus disorder prediction 34 48 - -
Trre1g00545 940 SUPERFAMILY RNI-like 386 606 - -
Trre1g00545 940 ProSiteProfiles F-box domain profile. 136 182 IPR001810 GO:0005515
Trre1g00545 940 FunFam F-box/LRR-repeat protein 15 isoform C 791 934 - -
Trre1g00545 940 Pfam F-box-like 144 184 IPR001810 GO:0005515
Trre1g00545 940 SUPERFAMILY RNI-like 162 428 - -
Trre1g00545 940 MobiDBLite consensus disorder prediction 1 65 - -
Trre1g00545 940 SUPERFAMILY RNI-like 619 928 - -
Trre1g00545 940 SMART fbox_2 142 182 IPR001810 GO:0005515
Trre1g00545 940 FunFam F-box/LRR-repeat protein 15 695 780 - -
Trre1g00545 940 PANTHER OS10G0396666 PROTEIN 129 938 - -
Trre1g00545 940 SMART LRR_CC_2 654 679 IPR006553 -
Trre1g00545 940 SMART LRR_CC_2 453 483 IPR006553 -
Trre1g00545 940 SMART LRR_CC_2 628 653 IPR006553 -
Trre1g00545 940 SMART LRR_CC_2 313 338 IPR006553 -
Trre1g00545 940 SMART LRR_CC_2 523 553 IPR006553 -
Trre1g00545 940 SMART LRR_CC_2 495 519 IPR006553 -
Trre1g00545 940 SMART LRR_CC_2 386 411 IPR006553 -
Trre1g00545 940 SMART LRR_CC_2 565 590 IPR006553 -
Trre1g00545 940 SMART LRR_CC_2 874 898 IPR006553 -
Trre1g00545 940 SMART LRR_CC_2 702 727 IPR006553 -
Trre1g00545 940 SMART LRR_CC_2 755 795 IPR006553 -
Trre1g00545 940 SMART LRR_CC_2 899 934 IPR006553 -
Trre1g00545 940 SMART LRR_CC_2 339 364 IPR006553 -
Trre1g00545 940 Gene3D Ribonuclease Inhibitor 788 938 IPR032675 -
Trre1g00545 940 Gene3D Ribonuclease Inhibitor 134 383 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00545 Trre-Chr1 4078866 4085307 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00545 - - gmx:100782842 1430.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00545 1 4078866 4085307 Trre1g00545 1 4078866 4085307 ECH