Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00539 ATGAAGAACGATTGGTTATCATGGATGGATTCAGATCCAAACATATATCCATTACAACCATTCGTATTTAATAATTTCTTAGGTTCTCAATTTCTACAATCCTTTCTACAAAATTCTAGAAGCTTATACGAAAGTTCGGCGATAGAAGAAGCATTCGGCCACGTGTCGAAATTCGCCGGCGCGTTGTTGTTTTTGTTTACCGGTGGTGGATCAAATGTTTGCGGTGGTGGTTCTCTTCGATTTGGCGGTGGTTCTGGTAATGTGCATATGAATATGAAGGTTAATCCTGTGATTGCGAATAATGTGGCTGGGTTTGGGTTTCCGTTTGGTGTTAGGTCGAAGAGGAAAGGTTTGGAACGTGTGAGTTTGGGGAAGATTTCGAATTTTGTGGTTAAGTTGTTTTGGAGAGAAGCTAAAAGGATTCAATCGTATCCTATTCTTTCGATTGCTGCTGCATTGGTGCCGCCAATTCAAAACTTGTCATCAAATCTACTGTCTGGGCCAATGCAGGATCCTGGTGTGCAAATGCATGAAAGCATGGACCGAGGGCCAAAGGATTTTGAACGTTCAGGATGTCCTCGTCTATCCGTTTCCGAGTTGAACCTAGCAAACTCTGCTGTGGAGCCTAAAACTGGCATTGAATTTCCTGTGGTTCTGGATAATTTATCAGATGGAGAGCAGAATTCTAGCTTTAACTCAGAGGTCCTGGTTGGAACAGGATACAAAAACATGACAATTGTTAAAATCAAGACACTGAAAGTCTATGCTTTTGGATTTTATGTTCACCCGTACTCCTTATGTGAGAAGTTGGGCCCAAAATATGCATCAATTTCTGCAGATGAACTGGATAGCCGTAATGATTTCTACCAGGATCTTCTCAGGGAAGATATCAATATGACTGTTAGGCTTGTCGTAAATTGCAAAGGAATGAAAATTAACAATGTGAAAGATGCTTTTGAAAAATCGCTTAGAGCTCGATTAGTGAAGACAAATCCATCCGCAGACTTTGATTGCCTTTGGACATTTGGTTCATACTTTACAGAGAATATCTCAATACCTTTGGGAACAGTTATTGAGTTTAAGCGAACAGTTGATGGACGTCTGATTACTGAAATTGGTGGCAATCACATTGGAAGTGTCCACAGCAAAGATTTGTGTCGGGCTTTCTTTGGCATGTACATTGGAGATGTCCCTGTTTGCGAACAAACTAAGAAAGAGATTGGCACAAACATTGCAAATATTATTAGGAATTGTTGA 1257 0.4041 MKNDWLSWMDSDPNIYPLQPFVFNNFLGSQFLQSFLQNSRSLYESSAIEEAFGHVSKFAGALLFLFTGGGSNVCGGGSLRFGGGSGNVHMNMKVNPVIANNVAGFGFPFGVRSKRKGLERVSLGKISNFVVKLFWREAKRIQSYPILSIAAALVPPIQNLSSNLLSGPMQDPGVQMHESMDRGPKDFERSGCPRLSVSELNLANSAVEPKTGIEFPVVLDNLSDGEQNSSFNSEVLVGTGYKNMTIVKIKTLKVYAFGFYVHPYSLCEKLGPKYASISADELDSRNDFYQDLLREDINMTVRLVVNCKGMKINNVKDAFEKSLRARLVKTNPSADFDCLWTFGSYFTENISIPLGTVIEFKRTVDGRLITEIGGNHIGSVHSKDLCRAFFGMYIGDVPVCEQTKKEIGTNIANIIRNC 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00539 418 Gene3D - 207 393 IPR016088 -
Trre1g00539 418 PANTHER FATTY-ACID-BINDING PROTEIN 2 35 416 - -
Trre1g00539 418 Gene3D - 265 408 IPR016089 -
Trre1g00539 418 Pfam Chalcone isomerase like 235 407 IPR016087 -
Trre1g00539 418 SUPERFAMILY Chalcone isomerase 207 416 IPR036298 GO:0016872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00539 Trre-Chr1 4005047 4009761 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00539 - - gmx:100803025 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00539 1 4005047 4009761 Trre1g00539 1 4005047 4009761 ECH