Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00533 ATGGAGGAAGGACAGCCCAGAAGCAGAAATTTCAAGAGGGTATGTGTCTTCTGCGGCAGCAACTCCGGCAACCGTCAAATTTTCAGTGACGCCGCCATTCAATTGGCTGATGAACTGGTTAAGAGGAACATAGATTTGGTGTATGGTGGAGGAAGTGTAGGACTGATGGGTTTAATATCTCAGAAAATGTATAATGGTGGCTGCCATGTTCTCGGGGTTATTCCAAAAGCTCTCATGCCTCATGAGATATCTGGTGAAGCAGTAGGTGAAGTAAAGATTGTTTCAGATATGCATGAGAGAAAAGCTGCAATGGCTCAAGAAGCTGATGCATTTATTGCACTCCCCGGAGGATATGGAACTATGGAAGAGCTTCTGGAGATGATAACTTGGGCTCAACTTGGAATTCATAAAAAACCGGTTGGTCTACTGAATGTTGATGGTTACTATAACTCTTTGCTTGCATTATTCGACAATGGTGTTGAAGAAGGCTTCATTAAGCCCAGTGCTCGGAGTATAGTTGTCTCAGCTTCATCAGCCAAAGAACTTATGATGGAGATGGAGAGCTACTCTCCTTCCCATGAGCATGTAGCCCCTCATGAGAGCTGGCAGATGAAGCAATTAAGTAATTATCCAGGACAAGAAAAGGCAGAATGA 654 0.4388 MEEGQPRSRNFKRVCVFCGSNSGNRQIFSDAAIQLADELVKRNIDLVYGGGSVGLMGLISQKMYNGGCHVLGVIPKALMPHEISGEAVGEVKIVSDMHERKAAMAQEADAFIALPGGYGTMEELLEMITWAQLGIHKKPVGLLNVDGYYNSLLALFDNGVEEGFIKPSARSIVVSASSAKELMMEMESYSPSHEHVAPHESWQMKQLSNYPGQEKAE 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00533 217 SUPERFAMILY MCP/YpsA-like 10 189 - -
Trre1g00533 217 Pfam Possible lysine decarboxylase 56 186 IPR031100 -
Trre1g00533 217 FunFam Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 11 205 - -
Trre1g00533 217 NCBIfam Rossman fold protein, TIGR00730 family 12 189 IPR005269 GO:0009691|GO:0016787
Trre1g00533 217 Gene3D - 10 205 - -
Trre1g00533 217 PANTHER LOG FAMILY PROTEIN YJL055W 7 210 - -
Trre1g00533 217 MobiDBLite consensus disorder prediction 194 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00533 Trre-Chr1 3953864 3956233 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00533 K22522 - gmx:100785484 378.252