Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00527 ATGAAAAACTTTGCAGCACAACTATTACTTGTGATCATTTCTTTTCTAATAAACACTAGAAATGGAATTGAGGCATCAACTCATAATAACAATATTGATCATATCAAATACAGGATACCTGAAGAACAACCTTACAGAACTTCTTTTCATTTTCAGCCTCCACAAAATTGGATGAATGATCCAAATGCCCCTATGTACTATAAAGGTGTTTACCACCTTTTCTACCAACATAATCCTTATGCAGCAACATTTGGTGATATAATCATATGGGCACATTCTGTATCCTATGATCTCATCAATTGGATTCATCTGAATAATGCTCTTGAACCAAGTGAACCTTATGACATCAACAGTTGTTGGTCTGGTTCAGCCACTATACTCCCAGGTGAAAAACCTGCTATTTTGTACACAGGAATTGATCAAAATAAACATCAAGTTCAAAACTTAGCTATACCGAAGAATCTATCAGACCCTTTCTTAAGGGAATGGCTAAAACATCCTCAAAATCCTTTGATTACTCCACCTAGTGGAGTTGAAGTGGATGAATTCAGAGATCCTTCAACTGCATGGCTTGGAAAAGATGGAAAATGGAGGGTAATAATCGGTGCTCAAAATGGCGATGAAGGGAAAACTATTCTCTACAAGAGTGAGGATTTTGTTAATTGGATAATAGATCCTAATCCATTTTTTGCAACAGATAATACTAGAGTTTGTGAATGTCCAGATTTTTTTCCTGTGTATATCAATAACACAAATGGAGTTGATACATCGGTGGAAAATTCGAGTGTTAGACATGTCATGAAAATAAGCTATCAAAGCAAACTGCATGATTACTATTTTGTTGGTAAATATGTATCTGATAAGGAAAACTATATTCCTGATGAAAAATTTACAGGAACTAGTAAAGATTTAAGGCTTGACTATGGTAAATTTTATGCTTCAAAGTCATTTTTTGATACTGCTAAGAATAGGAGAATATTGTGGGGTTGGGTGAATGAGTCTGACACTACACAAGATGATATTCAGAAAGGATGGGCAGGTTTACAGACAATTCCAAGGCAAGTTTGGCTTGATAAAAGTGGGAAGAGATTAATACAATGGCCAATTGAAGAAGTAGATAATTTAAGAGACAAAAAAATCAGTATTACAGGAAAGAAACTTGAAGGTGGATCAACTCTTGAAATCTCAGGCATTACTGCATCACAGGTTGATGTAGAAGTGTTGTTTGATCTACCTGAACTAGAAAATGGCGAATGGTTAGAAGATCCGAGTGAAGTTGATCCTCAACTACTATGTAGCAAACAATATGAATCAAGAAGTGGTAAAATTGGGCCATTTGGTTTATTAGCTTTAGCTTCAAAGGATCTCACAGAACAAACTGCAGTGTTTTTCCAAATATATAGAACTTCCAATAGATATGTATGTCTAATGTGCAGTGACCAAAGCAGGTCTTCATTGCGAAAGGACCTTGATAAAACAACATATGGAACTATCTTTGACATAGATTCTAATCTCAAAACGATTTCGCTTAGAAGCTTGATTGACAAGTCCATTATTGAGAGTTTTGGAGATGGAGGGAAAGCTTGCATAACAAGTAGAGTTTATCCCTTATTGGCTATAGAGAAAGATGCACATCTTTATGTATTCAACAATGGAAGCCAAAGTGTGGTTATCTCAAAACTTAATGCTTGGAGCATGAAGCAAGCAAAGATTGGTCATGATGGAAATATAAATTGTGCCTAG 1743 0.354 MKNFAAQLLLVIISFLINTRNGIEASTHNNNIDHIKYRIPEEQPYRTSFHFQPPQNWMNDPNAPMYYKGVYHLFYQHNPYAATFGDIIIWAHSVSYDLINWIHLNNALEPSEPYDINSCWSGSATILPGEKPAILYTGIDQNKHQVQNLAIPKNLSDPFLREWLKHPQNPLITPPSGVEVDEFRDPSTAWLGKDGKWRVIIGAQNGDEGKTILYKSEDFVNWIIDPNPFFATDNTRVCECPDFFPVYINNTNGVDTSVENSSVRHVMKISYQSKLHDYYFVGKYVSDKENYIPDEKFTGTSKDLRLDYGKFYASKSFFDTAKNRRILWGWVNESDTTQDDIQKGWAGLQTIPRQVWLDKSGKRLIQWPIEEVDNLRDKKISITGKKLEGGSTLEISGITASQVDVEVLFDLPELENGEWLEDPSEVDPQLLCSKQYESRSGKIGPFGLLALASKDLTEQTAVFFQIYRTSNRYVCLMCSDQSRSSLRKDLDKTTYGTIFDIDSNLKTISLRSLIDKSIIESFGDGGKACITSRVYPLLAIEKDAHLYVFNNGSQSVVISKLNAWSMKQAKIGHDGNINCA 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00527 580 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 380 566 - -
Trre1g00527 580 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 54 380 - -
Trre1g00527 580 SUPERFAMILY Concanavalin A-like lectins/glucanases 368 568 IPR013320 -
Trre1g00527 580 CDD GH32_Fruct1-like 56 357 - -
Trre1g00527 580 SUPERFAMILY Arabinanase/levansucrase/invertase 42 369 IPR023296 -
Trre1g00527 580 Gene3D - 382 566 - -
Trre1g00527 580 Pfam Glycosyl hydrolases family 32 N-terminal domain 50 368 IPR013148 -
Trre1g00527 580 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 41 571 - -
Trre1g00527 580 Pfam Glycosyl hydrolases family 32 C terminal 371 565 IPR013189 -
Trre1g00527 580 Gene3D Glycosyl hydrolase domain; family 43 55 381 IPR023296 -
Trre1g00527 580 ProSitePatterns Glycosyl hydrolases family 32 active site. 50 63 IPR018053 GO:0004553|GO:0005975
Trre1g00527 580 SMART glyco_32 50 526 IPR001362 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00527 Trre-Chr1 3910548 3913376 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00527 60 574 Glycoside Hydrolase AT1G55120 55.810 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00527 - K01193 gmx:100777487 943.725