Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00524 ATGGAGAACATTACAAAGGATGCATCCTCAAAAAGTATCAATTCTGAACAACCATACAGAACTGGATACCACTTTCAGCCCCTAAAAAATTGGATGAATGGACCAATGTACTATAAAGGAGTTTACCATTTCTTCTACCAACGTAACCCTGATGGAGCAACCTTTGGTCATGAGAAAATGATATGGGGTCATTCTGTATCAAAAGATCTCATAAATTGGACTCATCTGAATGATGCTATTGAACCAAGTTGTGTTGGTGACTCAAAGAGTTGCTTCTCAGGCTCAGCCACAATACTTCCAGGAGAAAAACCTCTTATGTTGTATACAGGAATTGATGGAAAAGGACACCAAGTTCAAAACATAGCTATACCAAAGAATTTATCTGATTCTTACTTAAGGGAATGGGAAAAACACCCTCAAAATCCTTTGATGACTGCACCTACTGGAGTTGAAGAGAATGAATTCAGAGATCCTTCTACTGCATGGCAAGGAAAAGATGGAAAATGGAGGGTAATCATTGGTGCTCAAAAGGGTGATGAAGGAAAAGCTATTCTTTATAGAAGTGATGATTTTGTTAATTGGATTGTTGATCCTAATCCATTCTATGCAACAGATGGTACTGGAGTTTGTGAATGTCCAGAATTTTTTCCTGTTTATATCAATAGCACAAATGGGGTGGATACAACTATGGAAAATTCAAGTGTTAGACATGTCTTGAAGATAAGCTATTATCGTCGACATCTTGACTTCTACTTCATTGGAAATTATGTATCTGATTCTGATCAGGAAAAATTTATTCCTGATGCAAAATATACAGAAACTTACAAAGACTTAAGATTTGATTATGGCCTTTATTATGCTTCAAAGTCATTTTTTGACTATGCTACAAATAGGAGAATATTATGGGGATGGGTTGAAGAACATGACTCCAAACAAGATTCTATAGAAAAAGGATGGGCAGGTTTACAGACAATCCCAAGGAAGATTTGGCTTGATAAAAGTGGAAAGCAATTAATTCAATGGCCAATTGAAGAGCTAGAAAAACTACGTGACACGCAAATAAGTATCGCAGGAGAGACACTCCTAAGTGGATCAACTGTTGAAGTAAAAGGCATCACTGCATCTCAGGCTGATGTGGAAGTCTTGTTTGAGCTACCTGATCTACAAAGTGCTGAGTTGCTTGAACCAAGTGAAGTTGATCCCCAGATACTTTCTAGTGAACAATATGTATCAAGAAAAGGCATGATAGGACCATTTGGTTTGCAAGTTTTAGCATCAAAAGACCAAACCGAGAGGACTACAATATCATTCCGAATATATAGAGTCGTCGATAGATATATATGCTTGATGATAAGTGACCCAAGCAGGTCTTCGTTGAGGCAGGGTCTTATTAAACCAATATATGCAACTGTCTTTGACATAGATCCCAATCTCAAAACGATTTCGCTTAGAAGCTTGATTGATCGGTCGATTATTGAGAGTTTTGGAGATGGAGGGAAAGCTTGCATAACAAGTAGAGTTTATCCCTTATTGGCTATAGAGAAAGATGCACATCTTTATGTATTCAACAATGGAAGCCAAAGTGTGGTTATCTCAAAACTTAATGCTTGGAGCATGAAGCAAGCAGAGTTTGCAACAGAAAGCTGA 1647 0.3752 MENITKDASSKSINSEQPYRTGYHFQPLKNWMNGPMYYKGVYHFFYQRNPDGATFGHEKMIWGHSVSKDLINWTHLNDAIEPSCVGDSKSCFSGSATILPGEKPLMLYTGIDGKGHQVQNIAIPKNLSDSYLREWEKHPQNPLMTAPTGVEENEFRDPSTAWQGKDGKWRVIIGAQKGDEGKAILYRSDDFVNWIVDPNPFYATDGTGVCECPEFFPVYINSTNGVDTTMENSSVRHVLKISYYRRHLDFYFIGNYVSDSDQEKFIPDAKYTETYKDLRFDYGLYYASKSFFDYATNRRILWGWVEEHDSKQDSIEKGWAGLQTIPRKIWLDKSGKQLIQWPIEELEKLRDTQISIAGETLLSGSTVEVKGITASQADVEVLFELPDLQSAELLEPSEVDPQILSSEQYVSRKGMIGPFGLQVLASKDQTERTTISFRIYRVVDRYICLMISDPSRSSLRQGLIKPIYATVFDIDPNLKTISLRSLIDRSIIESFGDGGKACITSRVYPLLAIEKDAHLYVFNNGSQSVVISKLNAWSMKQAEFATES 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00524 548 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 13 544 - -
Trre1g00524 548 Gene3D - 356 539 - -
Trre1g00524 548 Pfam Glycosyl hydrolases family 32 C terminal 345 538 IPR013189 -
Trre1g00524 548 CDD GH32_Fruct1-like 30 331 - -
Trre1g00524 548 SMART glyco_32 24 499 IPR001362 GO:0004553|GO:0005975
Trre1g00524 548 SUPERFAMILY Arabinanase/levansucrase/invertase 15 343 IPR023296 -
Trre1g00524 548 Gene3D Glycosyl hydrolase domain; family 43 28 355 IPR023296 -
Trre1g00524 548 SUPERFAMILY Concanavalin A-like lectins/glucanases 342 541 IPR013320 -
Trre1g00524 548 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 354 539 - -
Trre1g00524 548 Pfam Glycosyl hydrolases family 32 N-terminal domain 24 342 IPR013148 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00524 Trre-Chr1 3895419 3898645 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00524 16 542 Glycoside Hydrolase AT3G13784 51.301 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00524 K01193 - gmx:100777487 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00524 1 3895419 3898645 Trre1g00524 1 3895419 3898645 ECH