Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00523 ATGGAGAACATTACAAAGGATGCATCCTCAAAAAGTATCAATTCTGAACAACCATACAGAACTGGATACCACTTTCAGCCCCTAAAAAATTGGATGAATGATCCTAATGGACCAATGTACTATAAAGGAGTTTACCATTTCTTCTACCAACGTAACCCTGATGGAGCAACCTTTGGTCATGAGAAAATGATATGGGGTCATTCTGTATCAAAAGATCTCATAAATTGGACTCATCTGAATGATGCTATTGAACCAAGTTGTGTTGGTGACTCAAAGAGTTGCTTCTCAGGCTCAGCCACAATACTTCCAGGAGAAAAACCTCTTATGTTGTATACAGGAATTGATGGAAAAGGACACCAAGTTCAAAACATAGCTATACCAAAGAATTTATCTGATTCTTACTTAAGGGAATGGGAAAAACACCCTCAAAATCCTTTGATGACTGCACCTACTGGAGTTGAAGAGAATGAATTCAGAGATCCTTCTACTGCATGGCAAGGAAAAGATGGAAAATGGAGGGTAATCATTGGTGCTCAAAAGGGTGATGAAGGAAAAGCTATTCTTTATAGAAGTGATGATTTTGTTAATTGGATTGTTGATCCTAATCCATTCTATGCAACAGATGGTACTGGAGTTTGTGAATGTCCAGAATTTTTTCCTGTTTATATCAATAGCACAAATGGGGTGGATACAACTATGGAAAATTCAAGTGTTAGACATGTCTTGAAGATAAGCTATTATCGTCGACATCTTGACTTCTACTTCATTGGAAATTATGTATCTGATTCTGATCAGGAAAAATTTATTCCTGATGCAAAATATACAGAAACTTACAAAGACTTAAGATTTGATTATGGCCTTTATTATGCTTCAAAGTCATTTTTTGACTATGCTACAAATAGGAGAATATTATGGGGATGGGTTGAAGAACATGACTCCAAACAAGATTCTATAGAAAAAGGATGGGCAGGTTTACAGACAATCCCAAGGAAGATTTGGCTTGATAAAAGTGGAAAGCAATTAATTCAATGGCCAATTGAAGAGCTAGAAAAACTACGTGACACGCAAATAAGTATCGCAGGAGAGACACTCCTAAGTGGATCAACTGTTGAAGTAAAAGGCATCACTGCATCTCAGGCTGATGTGGAAGTCTTGTTTGAGCTACCTGATCTACAAAGTGCTGAGTTGCTTGAACCAAGTGAAGTTGATCCCCAGATACTTTCTAGTGAACAATATGTATCAAGAAAAGGCATGATAGGACCATTTGGTTTGCAAGTTTTAGCATCAAAAGACCAAACCGAGAGGACTACAATATCATTCCGAATATATAGAGTCGTCGATAGATATATATGCTTGATGATAAGTGACCCAAGCAGGTCTTCGTTGAGGCAGGGTCTTATTAAACCAATATATGCAACTGTCTTTGACATAGATCCCAATCTCAAAACGATTTCGCTTAGAAGCTTGATTGATCGGTCGATTATTGAGAGTTTTGGAGATGGAGGGAAAGCTTGCATAACAAGTAGAGTTTATCCCTTATTGGCTATAGAGAAAGATGCACATCTTTATGTATTCAACAATGGAAGCCAAAGTGTGGTTATCTCAAAACTTAATGCTTGGAGCATGAAGCAAGCAGAGTTTGCAACAGAAAGCTGA 1656 0.375 MENITKDASSKSINSEQPYRTGYHFQPLKNWMNDPNGPMYYKGVYHFFYQRNPDGATFGHEKMIWGHSVSKDLINWTHLNDAIEPSCVGDSKSCFSGSATILPGEKPLMLYTGIDGKGHQVQNIAIPKNLSDSYLREWEKHPQNPLMTAPTGVEENEFRDPSTAWQGKDGKWRVIIGAQKGDEGKAILYRSDDFVNWIVDPNPFYATDGTGVCECPEFFPVYINSTNGVDTTMENSSVRHVLKISYYRRHLDFYFIGNYVSDSDQEKFIPDAKYTETYKDLRFDYGLYYASKSFFDYATNRRILWGWVEEHDSKQDSIEKGWAGLQTIPRKIWLDKSGKQLIQWPIEELEKLRDTQISIAGETLLSGSTVEVKGITASQADVEVLFELPDLQSAELLEPSEVDPQILSSEQYVSRKGMIGPFGLQVLASKDQTERTTISFRIYRVVDRYICLMISDPSRSSLRQGLIKPIYATVFDIDPNLKTISLRSLIDRSIIESFGDGGKACITSRVYPLLAIEKDAHLYVFNNGSQSVVISKLNAWSMKQAEFATES 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00523 551 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 13 547 - -
Trre1g00523 551 Pfam Glycosyl hydrolases family 32 N-terminal domain 24 345 IPR013148 -
Trre1g00523 551 SMART glyco_32 24 502 IPR001362 GO:0004553|GO:0005975
Trre1g00523 551 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 357 542 - -
Trre1g00523 551 Gene3D - 359 542 - -
Trre1g00523 551 ProSitePatterns Glycosyl hydrolases family 32 active site. 24 37 IPR018053 GO:0004553|GO:0005975
Trre1g00523 551 SUPERFAMILY Concanavalin A-like lectins/glucanases 345 544 IPR013320 -
Trre1g00523 551 SUPERFAMILY Arabinanase/levansucrase/invertase 15 346 IPR023296 -
Trre1g00523 551 CDD GH32_Fruct1-like 30 334 - -
Trre1g00523 551 Pfam Glycosyl hydrolases family 32 C terminal 348 541 IPR013189 -
Trre1g00523 551 Gene3D Glycosyl hydrolase domain; family 43 28 358 IPR023296 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00523 Trre-Chr1 3895419 3898645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00523 16 545 Glycoside Hydrolase AT3G13784 51.487 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00523 K01193 - gmx:100777487 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00523 1 3895419 3898645 Trre1g00523 1 3895419 3898645 ECH