Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00519 ATGGCACCACAGACTGAACCGTTGCCAAAACCAACCTACATTTCGTTACAACAACTTCAAAAACACAACAAACGTGACGACGCATGGATCTCCATCGACGGCAAGATCTACGACGTCTCTAAATGGGCCAACCACCATCCCGGCGGTGAACTTCCTCTCTTAAACCTCGCCGGCCAAGATGTCACCGACGCATTCCTAGCTTTTCATCCACCCACTGCTTACAAACACCTTGACACTTTCTTCACCGGCCATTATCTCCGTGATTACGCCGTCTCGGAGGTTTCCCGTGATTACCGGAGTCTCTTCTCCGAACTCACTAAAATGGGTTTGTTTGAAGATAAAGGACACGGTGTTTTGTTTTTACTTTCGTTAATCTCTGTTATGTTCTGTTTCAGTGTTTATGGTGTTCTGTTTTCTGACAGCACTATTGTTCACGTGCTTTCTGGTGCGTTAATGGGTTTTATGTGGATTCAAAGTGGTTGGATTGGTCATGATTCTGGTCATTATCAGATTATGATGAACAAAAAATGGAACAGTTTTGTTCAGATTCTTTCTGGTAATGTTATTGCTGGTATAAGCATTGAATGGTGGAAATGGAATCATAATGCTCATCATATTGCTTGTAATAGTCTTGATTTTGATCCTGATCTTCAACATTTACCGTTTTTCGTCGTGTCTTCCAAGTTTTTTACTTCACTCACTTCTTGTTTTTATGGTAGAAAAATGAATTTTGATTCATTTGCTAGGTTTTTGGTTAGTTATCAACATTGGAGTTATTATCCTGTTATGTGTTTTGCTAGGTTGAATTTGTTTGCTCAATCATTTTTCTTGTTGTTGTCTAATAGAAAAGTGCCTAATAGAAAAATGGAACTTTTAGGGTTACTTTTGTTTTGGACTTGGTACCCTTTGTTAGTTTCATTTTTACCTAATTGGAGTGAAAGGGTTTTGTTTGTGATTGCTAGTTTTTCTGTGACTGGTATTCAACATGTTCAATTCACTTTGAATCATTTTTCGGCTAGTGTTTATGTCGGTCCACCGACGGCTCATGATTGGTTTGAGAAGCAAGCTAGTGGGACACTTGATGTTAAGTGTTCTTCTTGGATGGATTGGTTTCATGGTGGTTTGCAGTTTCAGGTTGAACATCATCTGTTTCCGAGGCTTCCTCGGTGTAATTTGAGGAAGATTTCGCCTTTGGTTAAGGATCTGTGCAAGAAACATAATCTTCCTTATAATTGTGTGTCTTTCTGGAAGGCTAATGTGCTTACGATTCAGACGTTGAGGAATGCTGCTTTGCAGGCTCGGGATCTTACTAAACCGGTTCCGAGAAATTTAGTTTGGGAAGCTGTTAATACTCATGGATGA 1362 0.3979 MAPQTEPLPKPTYISLQQLQKHNKRDDAWISIDGKIYDVSKWANHHPGGELPLLNLAGQDVTDAFLAFHPPTAYKHLDTFFTGHYLRDYAVSEVSRDYRSLFSELTKMGLFEDKGHGVLFLLSLISVMFCFSVYGVLFSDSTIVHVLSGALMGFMWIQSGWIGHDSGHYQIMMNKKWNSFVQILSGNVIAGISIEWWKWNHNAHHIACNSLDFDPDLQHLPFFVVSSKFFTSLTSCFYGRKMNFDSFARFLVSYQHWSYYPVMCFARLNLFAQSFFLLLSNRKVPNRKMELLGLLLFWTWYPLLVSFLPNWSERVLFVIASFSVTGIQHVQFTLNHFSASVYVGPPTAHDWFEKQASGTLDVKCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRKISPLVKDLCKKHNLPYNCVSFWKANVLTIQTLRNAALQARDLTKPVPRNLVWEAVNTHG 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00519 453 CDD Delta6-FADS-like 146 408 - -
Trre1g00519 453 PIRSF FA_sphingolip_des 1 441 IPR012171 GO:0016491
Trre1g00519 453 PANTHER FATTY ACID DESATURASE 2 7 435 IPR012171 GO:0016491
Trre1g00519 453 Pfam Fatty acid desaturase 144 412 IPR005804 GO:0006629
Trre1g00519 453 Gene3D - 4 85 IPR036400 -
Trre1g00519 453 Pfam Cytochrome b5-like Heme/Steroid binding domain 16 84 IPR001199 -
Trre1g00519 453 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 11 95 IPR001199 -
Trre1g00519 453 SMART Cyt_b5_2 14 86 IPR001199 -
Trre1g00519 453 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 7 88 IPR036400 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00519 Trre-Chr1 3872388 3873749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00519 1 453 Lipid Metabolism Gene Families AT2G46210 62.914 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00519 K21737 - ini:109158372 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00519 1 3872388 3873749 Trre1g00519 1 3872388 3873749 ECH