Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre1g00513 | ATGGAGAATGGAGATATACCTGAGGATGCCAATGAGCATTGCCCAGGTCCTCAGTCTGATTCTGCTGGAAAATCTGATTCATGTCAAGGATGTCCAAATCAACAATTTTGTGCCACTGCAGGACCTGATCCTGATATGATTGCCATCGCAGAAAGAATGGCCACTGTGAAACATAAGATATTGGTCATGTCCGGAAAGGGAGGTGTTGGCAAGAGCACATTTTCTGCCCAGCTGGCATTTGCTTTAGCTGCAAGGGATTTTCAAGTTGGTCTTCTTGACATAGACATTTGTGGTCCGAGCATCCCAAAGATGCTTGGTCTAGAAGGTCAAGAGCTAAACGAGAGCAACTTTGGGTTGTCTCCTGTCTATGTGGAGTATAATCTTGCGGTCATGTCAATTGGTTTCATGGATATTCAGCCAGATGAAGCTATTATATGGAGAGGTTCTCGCAAAACTGACAGAATCAAGAAGTTTTTAAAAGACGTTTATTGGGATGAACTTGATTTTCTAATTGTTGATACTCCACCTGGAACGTCAGATGAACAAATTACAATTGTTAAATCCCTAGGTGCTGCTAATGTAGATGGTGCAATCATAGTTACCACTCCTCAACAAGTCTCTCTTACTGATGTGAAAAAAGGAGTGAATTTTTGCAAGCAAATTGGAGTGAAAGTTCTTGGGGTTGTAGAGAATATGAGTGGTCTATCCCAGCCCATCTCAAATTTAAAGTTTTCGAAGATTACTAATAATGGTGAGATGAAAGATGTTACAGAATGGACATTGGAATACATGAGAGAAAAGGCGCCTGAAATGCTGAATTTCATTACTTGCAGTGAAGTATTTGATAGTAGTGGTGGTGGAGCGATAAAGATGTGCAATGAGATGGAGGTGCCCTTTCTTGGTAAGGTTCCTTTAGATCCACAACTTTGCAAGGCAGCTGAAGAAGGTAGATCATGCTTTACAGACAAAAACTGTGTATTGAGCGCCCCATCATTACAAAATATAATAGACAAGATGATGGAAACTAGCGGGTTGTCAATGACGAATATAAGAGCTTCTATGGAGAATGTAGATATACCTGAGGATGGCAATGAGCATTGCCCAGGTCCTCAGTCTGATTCTGCTGGAAAATCTGATTCACGTCAAGGAAGCCCAAATCAAAAAATTTGTGCCACTGTTCCCAAAGGACCTGATCCTGACATGGTTGCAATCGCAGAAAGAATGCCCACCGTGAAACATAAGATACTGGTCATGTCCGGAAAGGGTGGTGTTGGCAAGAGCACATTTTCTGCCCAGCTGGCATTTGCTTTAGCTGCAAGGGATTTTAAAGTTGGTCTTCTTGACATAGACATTTGTGGTCCAAGCATCCCAAAGATGGTTGGTCTAGAAGGTCAGACGATACACCAGGGCAACCTTGGGTGGTTACCTCTCTATGTGGAGTCTAATCTTGCAGTCATGTCACTTGGGTTGATAATTTCTCATCCAAATACACCTGTTATATGGAAAGGTCCTCGCAAAAATGAACTTATCAGGCAGTTTATAAAAGGCGTTTATTGGAATGAACTTGATTTTCTAATTGTTGATAATCCACCTGGAACCTCAGACGAACAAATTGAAATTGTTCAAGGCCTTGGTGCTGCTAACATAGATGGTGCAATCATAGTTACCACTCCTCAACAAGTCTCTCTTATTGATGTGAAAAAAGAAGTGAATTTTTGTTACAAAACTGGAGTGAAAGTTCTCGGTGTTGTAGAGAATATGAGTGGTCTATCCCAGCCCATCTCAAATTTGAAGTTTATGAAGATCACAAATAATGGTGAGATGAAAGATGTTACAGAGTGGACATCGGAGTACATGAGAGAAAAAGCGCCCGAATTGCTGAATTTAATCGTCTGTAGTGAAGTATTTGATAGTAGTGGTGGTGGAGCGATAAAAATGTGCAGCGAGATGAAGGTGCCCTTTCTTGGTAAGGTTCCTTTAGATCCACAACTTTGCAAGGCAGCTGAAGAAGGTAGATCATGTTTTACAGATAAAGACTGCGTTGTCAGCGCTTCAGCATTACAAATGACAATTGACAAGATGATGGAAACTATCGGGTTACAAAAGATAATAGACAAGATGATGGAAATTACTGTAAGTAATGTAGTGTAG | 2151 | 0.41 | MENGDIPEDANEHCPGPQSDSAGKSDSCQGCPNQQFCATAGPDPDMIAIAERMATVKHKILVMSGKGGVGKSTFSAQLAFALAARDFQVGLLDIDICGPSIPKMLGLEGQELNESNFGLSPVYVEYNLAVMSIGFMDIQPDEAIIWRGSRKTDRIKKFLKDVYWDELDFLIVDTPPGTSDEQITIVKSLGAANVDGAIIVTTPQQVSLTDVKKGVNFCKQIGVKVLGVVENMSGLSQPISNLKFSKITNNGEMKDVTEWTLEYMREKAPEMLNFITCSEVFDSSGGGAIKMCNEMEVPFLGKVPLDPQLCKAAEEGRSCFTDKNCVLSAPSLQNIIDKMMETSGLSMTNIRASMENVDIPEDGNEHCPGPQSDSAGKSDSRQGSPNQKICATVPKGPDPDMVAIAERMPTVKHKILVMSGKGGVGKSTFSAQLAFALAARDFKVGLLDIDICGPSIPKMVGLEGQTIHQGNLGWLPLYVESNLAVMSLGLIISHPNTPVIWKGPRKNELIRQFIKGVYWNELDFLIVDNPPGTSDEQIEIVQGLGAANIDGAIIVTTPQQVSLIDVKKEVNFCYKTGVKVLGVVENMSGLSQPISNLKFMKITNNGEMKDVTEWTSEYMREKAPELLNLIVCSEVFDSSGGGAIKMCSEMKVPFLGKVPLDPQLCKAAEEGRSCFTDKDCVVSASALQMTIDKMMETIGLQKIIDKMMEITVSNVV | 716 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre1g00513 | 716 | ProSitePatterns | Mrp family signature. | 164 | 180 | IPR000808 | GO:0005524 | |
| Trre1g00513 | 716 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 399 | 675 | IPR027417 | - | |
| Trre1g00513 | 716 | Gene3D | - | 407 | 706 | IPR027417 | - | |
| Trre1g00513 | 716 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Trre1g00513 | 716 | Hamap | Cytosolic Fe-S cluster assembly factor NUBP1 [NUBP1]. | 7 | 344 | IPR028601 | GO:0016226|GO:0051536|GO:0051539 | |
| Trre1g00513 | 716 | PANTHER | NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED | 9 | 342 | IPR019591 | GO:0005524|GO:0016226|GO:0051536|GO:0140663 | |
| Trre1g00513 | 716 | SMART | AAA_5 | 57 | 227 | IPR003593 | GO:0016887 | |
| Trre1g00513 | 716 | SMART | AAA_5 | 412 | 565 | IPR003593 | GO:0016887 | |
| Trre1g00513 | 716 | MobiDBLite | consensus disorder prediction | 358 | 395 | - | - | |
| Trre1g00513 | 716 | MobiDBLite | consensus disorder prediction | 371 | 389 | - | - | |
| Trre1g00513 | 716 | Hamap | Iron-sulfur cluster carrier protein. | 51 | 340 | IPR019591 | GO:0005524|GO:0016226|GO:0051536|GO:0140663 | |
| Trre1g00513 | 716 | Hamap | Cytosolic Fe-S cluster assembly factor NUBP1 [NUBP1]. | 360 | 699 | IPR028601 | GO:0016226|GO:0051536|GO:0051539 | |
| Trre1g00513 | 716 | CDD | Mrp_NBP35 | 413 | 666 | IPR019591 | GO:0005524|GO:0016226|GO:0051536|GO:0140663 | |
| Trre1g00513 | 716 | Gene3D | - | 52 | 351 | IPR027417 | - | |
| Trre1g00513 | 716 | Pfam | NUBPL iron-transfer P-loop NTPase | 56 | 256 | IPR033756 | - | |
| Trre1g00513 | 716 | Pfam | NUBPL iron-transfer P-loop NTPase | 411 | 611 | IPR033756 | - | |
| Trre1g00513 | 716 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 44 | 320 | IPR027417 | - | |
| Trre1g00513 | 716 | CDD | Mrp_NBP35 | 58 | 311 | IPR019591 | GO:0005524|GO:0016226|GO:0051536|GO:0140663 | |
| Trre1g00513 | 716 | Hamap | Iron-sulfur cluster carrier protein. | 406 | 708 | IPR019591 | GO:0005524|GO:0016226|GO:0051536|GO:0140663 | |
| Trre1g00513 | 716 | ProSitePatterns | Mrp family signature. | 519 | 535 | IPR000808 | GO:0005524 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre1g00513 | Trre-Chr1 | 3842016 | 3846909 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre1g00513 | - | - | gmx:100777003 | 563.533 |