Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00508 ATGGAACGTGCAAGAAGACTCGCAAATCGTGCAACTCTGAAACGTCTTCTTTCAGAGGCGAAACAGAATCGAAACAATGAATCAACAACAATAACAACACCTATTCCATTTTCACTCTCTGGTTCATCTTCTTCAAGATACGTTTCATCTGTTTCAAACTCTGTTTTCAGAAACAGAGGATCCACAAAACCAGACAACAACATTTTTGGAAGAAACAACAATGTTTCACGAAGTGTTGGTGGATTTAACGGTGTTGGGTCTTCAACACAATCTCGATCCATCACTGTTGAAGCCCTTAAACCAAGTGATACATTTCCAAGACGCCATAACTCAGCAACACCAGAAGAACAAACAAAAATGGCTGAATCAGTTGGTTTTGATAACCTTGATTCACTTGTTGATGCAACAGTTCCAAAATCAATTCGTTTGAAGGAAATGAAGTTCAATCATTTTGATGAAGGGTTAACAGAAGGTCAAATGATTGAACACATGAAGGATTTAGCTTCAAAAAACAAAGTTTTCAAATCGTTTATCGGTATGGGATACTATAACACACATGTTCCACCAGTGATTTTGAGGAACATATTGGAAAATCCTGCTTGGTATACACAGTATACACCTTATCAAGCCGAGATATCGCAAGGTCGTCTTGAATCTTTGTTGAATTTTCAAACATTGATTACTGATCTTACTGGTTTGCCTATGTCAAATGCTTCATTGCTTGATGAAGGTACTGCTGCAGCTGAAGCAATGTCTATGTGTAATAATATTCAAAAGGGTAAGAAAAAAACTTTCATTATTGCTAGTAATTGTCATCCACAAACCATTGATATATGTCAGACAAGAGCTGATGGATTTGAACTCAAAGTTGTGGTCAAAGATCTTAAGGATATTGATTACAAATCTGGTGATGTTTGTGGTGTTCTTGTTCAGTATCCTGGTACTGAAGGTGAGGTTTTGGATTATGGTGAGTTTATTAAGAAGGCTCATGCTAATGAAGTTAAGGTTGTTATGGCAAGTGATTTGTTGGCATTGACTGTGTTGAAACCTCCTGGTGAGTTTGGAGCTGATATTGTTGTCGGTTCGGCTCAGAGATTCGGTGTTCCAATGGGTTATGGTGGTCCTCATGCTGCTTTCTTGGCTACTTCACAAGAGTACAAGAGGATGATGCCTGGAAGAATCATTGGTGTTAGTGTTGATTCTTCTGGTAAGTCAGCTTTGAGGATGGCTATGCAAACTAGGGAGCAGCATATCCGTAGGGATAAGGCTACCAGCAACATTTGCACTGCTCAGGCACTGCTTGCAAACATGGCTGCCATGTATGCTGTATATCATGGACCTGAAGGCCTTAAAGCCATTGCACAAAGGGTTCATGGTCTTGCTGGGGTATTTGCTCTTGGATTAAAGAAACTTGGAACTGTAGAAGTTCAGGATCAAGCCTTCTTTGACACTGTCAAAGTTAAGACTTCAAATGCCAAAGCAATTGCAGATGCTGCTGTCAAAAGTGAAATCAATTTGCGAGTTGTAGATGGAAACACCATCACTGTTGCTTTTGATGAAACAACCACATTAGAGGATGTTGATAAGCTTTTCAAAGTTTTTGCTGGTGGTAAATCTGTCTCATTCACAGCTGCATCTCTTGCACCAGAGTTTCAGAATGCAATTCCTTCTGGATTAGTTAGGGAGACTCCTTATCTGACACACCCTATCTTTAACACGTACCAAACTGAGCATGAGTTGCTGAGATACATTCATAGGCTACAATCAAAAGATCTCTCACTTGTCCACAGTATGATCCCACTTGGATCTTGTACAATGAAGCTGAATGCAACAACCGAAATGATGCCTGTGACATGGCCTAGCTTTGCTGATCTTCACCCTTTTGCACCAACTGAACAGGCTCAAGGTTATCAGGAAATGTTCAACAATTTGGGTGACCTGTTGTGTACCATCACTGGATTTGACTCCTTCTCTTTGCAACCAAATGCTGGTGCTGCCGGAGAATATGCTGGACTCATGGTTATTCGTGCATATCATGTGTCAAGAGGTGACCACCACCGCAATGTTTGCATTATCCCAGTATCAGCGCATGGTACAAATCCTGCTAGTGCTGCTATGGTTGGAATGAAAATTGTCACCATAGGAACTGATGCCAAGGGAAACATTAACATTGAAGAGTTGAAGAAGGCTGCTGAAAAACATAAGGACAACTTAGCTGCATTTATGGTTACATATCCTTCAACTCATGGTGTCTATGAAGAAGGTATTGATGATATTTGCAAGATCATCCATGATAATGGAGGCCAAGTATACATGGATGGTGCCAACATGAATGCTCAGGTTGGACTTACAAGCCCAGGCTGGATTGGAGCAGATGTTTGCCATCTCAATCTTCACAAGACATTTTGCATCCCTCATGGAGGAGGTGGCCCTGGAATGGGTCCTATTGGTGTAAAGAAACACTTGGCACCATTTTTACCCTCACATCCTGTGGTGCCAACTGGTGGAATTCCTGCCCCTGAAAATGCTCAACCACTTGGTAGCATCTCAGCTGCACCTTGGGGATCGGCACTCATATTGCCAATCTCATACACATACATTGCCATGATGGGTTCTAAAGGGCTCACTGATGCGTCAAAGATAGCCATTTTGAATGCTAACTACATGGCAAAAAGATTGGAGAATTATTACCCGGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAATTCATTATTGACTTAAGAGGCTTTAAGAACACTGCTGGCATAGAGCCTGAAGATGTTGCGAAACGTCTCATGGACTATGGATTTCATGGACCAACAATGTCATGGCCTGTTCCTGGTACACTCATGATTGAGCCTACTGAAAGTGAAAGCAAGGCTGAGTTAGACAGGTTTTGTGATGCTCTTATTTCCATTAGAAAAGAAATTGCTGAGATTGAGAAAGGAAATGCTGATGTTCACAACAATGTACTTAAGGGAGCCCCTCATCCACCATCACTTCTCATGGCTGATGCATGGACAAAACCATACTCCAGGGAGTATGCAGCCTTCCCTGCTCCATGGCTCCGTGGTGCGAAGTTTTGGCCTACCACAGGACGTGTTGATAATGTGTATGGCGACCGCAACCTGATTTGCACCCTTCTCCCAGCATCACAGGCTGTTGAAGAACCAGCTGCTGCCACAGCATAG 3198 0.4206 MERARRLANRATLKRLLSEAKQNRNNESTTITTPIPFSLSGSSSSRYVSSVSNSVFRNRGSTKPDNNIFGRNNNVSRSVGGFNGVGSSTQSRSITVEALKPSDTFPRRHNSATPEEQTKMAESVGFDNLDSLVDATVPKSIRLKEMKFNHFDEGLTEGQMIEHMKDLASKNKVFKSFIGMGYYNTHVPPVILRNILENPAWYTQYTPYQAEISQGRLESLLNFQTLITDLTGLPMSNASLLDEGTAAAEAMSMCNNIQKGKKKTFIIASNCHPQTIDICQTRADGFELKVVVKDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGEFIKKAHANEVKVVMASDLLALTVLKPPGEFGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKSALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKAIAQRVHGLAGVFALGLKKLGTVEVQDQAFFDTVKVKTSNAKAIADAAVKSEINLRVVDGNTITVAFDETTTLEDVDKLFKVFAGGKSVSFTAASLAPEFQNAIPSGLVRETPYLTHPIFNTYQTEHELLRYIHRLQSKDLSLVHSMIPLGSCTMKLNATTEMMPVTWPSFADLHPFAPTEQAQGYQEMFNNLGDLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHVSRGDHHRNVCIIPVSAHGTNPASAAMVGMKIVTIGTDAKGNINIEELKKAAEKHKDNLAAFMVTYPSTHGVYEEGIDDICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPAPENAQPLGSISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANYMAKRLENYYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRKEIAEIEKGNADVHNNVLKGAPHPPSLLMADAWTKPYSREYAAFPAPWLRGAKFWPTTGRVDNVYGDRNLICTLLPASQAVEEPAAATA 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00508 1065 Pfam Glycine cleavage system P-protein 551 827 IPR020581 GO:0004375|GO:0006546
Trre1g00508 1065 Pfam Glycine cleavage system P-protein 108 534 IPR020581 GO:0004375|GO:0006546
Trre1g00508 1065 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 865 1003 - -
Trre1g00508 1065 Gene3D - 616 867 IPR015421 GO:0003824
Trre1g00508 1065 Gene3D - 188 448 IPR015421 GO:0003824
Trre1g00508 1065 CDD GDC-P 577 972 IPR020581 GO:0004375|GO:0006546
Trre1g00508 1065 Coils Coil 724 744 - -
Trre1g00508 1065 SUPERFAMILY PLP-dependent transferases 551 1050 IPR015424 -
Trre1g00508 1065 FunFam Glycine cleavage system P protein 441 530 - -
Trre1g00508 1065 Gene3D Aspartate Aminotransferase, domain 1 177 530 IPR015422 GO:0003824
Trre1g00508 1065 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 188 448 - -
Trre1g00508 1065 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 88 1055 IPR020581 GO:0004375|GO:0006546
Trre1g00508 1065 FunFam glycine dehydrogenase (Decarboxylating), mitochondrial 616 855 - -
Trre1g00508 1065 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 99 1056 IPR003437 GO:0004375|GO:0006544
Trre1g00508 1065 NCBIfam aminomethyl-transferring glycine dehydrogenase 108 1049 IPR003437 GO:0004375|GO:0006544
Trre1g00508 1065 SUPERFAMILY PLP-dependent transferases 108 535 IPR015424 -
Trre1g00508 1065 MobiDBLite consensus disorder prediction 18 43 - -
Trre1g00508 1065 CDD GDC-P 157 534 IPR020581 GO:0004375|GO:0006546
Trre1g00508 1065 Gene3D Aspartate Aminotransferase, domain 1 868 1003 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00508 Trre-Chr1 3790815 3797866 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00508 K00281 - gmx:100819714 1891.7