Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00502 ATGTCCACAGATTCCTCTGATTCATCTAGAAGAATAGGGGAGTGTGTTTATGAGGTGTTGATGCCACTCATAGCTGTTTTTGAGGTTTTTGTCTTTGCTGTCACAGGTTGTTTCAACTCTCATCTTTCAATCCCAAACAAGAATTCTGCTTATACTGCTAAGGACTTCACTCGTCTTGCTCAAGAAACCAGATTTACTGTTAATGAAGTAGAGGCATTGCATGAACTATTTAAGAAGATAAGTAGCTCCTTAATTGATGATGGCTTGATTCACAAGGTGGAACTTCAACTGGCACTATTTCAAACCCCGAATGGTGAAAATCTTTTTCTGGATCGAGTTTTTGATATTTTTGATGAAAAAAGAAATGGTGTTATCGAGTTTGACGAATTCGTCCATGCGCTCAGTATTTTCCATCCTGATGCACCTATGGATGAAAAAATAGATTTTGCATTTAAGCTCTATGACCTGAGACAAACCGGGTTTATTGAGCCGGAGGAAGTCAAGCAAATGGTTATAGCTATTTTGATGGAATCTGAAATGAATCTTTCTGATGATCTTCTTGAAGCTATTGTTAACAAGACAATTGCTGATGTTGATCAAGACAATGATGGTAAAATCAGTAAAGAAGATTGGAAAGCTTTTGCAAGTCGAAATCCGTCGCTATTGAAGAACATGACACTTCCTTATTTGAAGGATATCACCAGTGTGTTTCCTAGTTTTATTTTCAAATCAGAGGCTGAAATTTGA 747 0.3708 MSTDSSDSSRRIGECVYEVLMPLIAVFEVFVFAVTGCFNSHLSIPNKNSAYTAKDFTRLAQETRFTVNEVEALHELFKKISSSLIDDGLIHKVELQLALFQTPNGENLFLDRVFDIFDEKRNGVIEFDEFVHALSIFHPDAPMDEKIDFAFKLYDLRQTGFIEPEEVKQMVIAILMESEMNLSDDLLEAIVNKTIADVDQDNDGKISKEDWKAFASRNPSLLKNMTLPYLKDITSVFPSFIFKSEAEI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00502 248 PANTHER CALCINEURIN B 35 247 IPR045198 GO:0005509|GO:0019722|GO:0019900
Trre1g00502 248 CDD EFh 146 216 IPR002048 GO:0005509
Trre1g00502 248 ProSiteProfiles EF-hand calcium-binding domain profile. 186 221 IPR002048 GO:0005509
Trre1g00502 248 SMART efh_1 146 174 IPR002048 GO:0005509
Trre1g00502 248 SMART efh_1 109 137 IPR002048 GO:0005509
Trre1g00502 248 SMART efh_1 190 218 IPR002048 GO:0005509
Trre1g00502 248 CDD EFh 110 171 IPR002048 GO:0005509
Trre1g00502 248 ProSiteProfiles EF-hand calcium-binding domain profile. 105 140 IPR002048 GO:0005509
Trre1g00502 248 ProSiteProfiles EF-hand calcium-binding domain profile. 142 177 IPR002048 GO:0005509
Trre1g00502 248 Gene3D - 55 248 - -
Trre1g00502 248 PRINTS Recoverin family signature 113 134 - -
Trre1g00502 248 PRINTS Recoverin family signature 160 178 - -
Trre1g00502 248 PRINTS Recoverin family signature 206 226 - -
Trre1g00502 248 FunFam calcineurin B-like protein 3 55 248 - -
Trre1g00502 248 ProSitePatterns EF-hand calcium-binding domain. 199 211 IPR018247 -
Trre1g00502 248 SUPERFAMILY EF-hand 58 240 IPR011992 -
Trre1g00502 248 Pfam EF-hand domain pair 145 213 IPR002048 GO:0005509
Trre1g00502 248 Pfam EF-hand domain pair 113 131 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00502 Trre-Chr1 3747950 3749994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00502 33 247 EF-hand Containing Proteins AT5G55990 58.605 8.39e-86 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00502 K06268 - gmx:100810494 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00502 1 3747950 3749994 Trre1g00502 1 3747950 3749994 ECH