Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00501 ATGTCTTCGTCTCCTTCTTGTTCCGCTGCTGACGACAGTCTTATGCGCAACCGAATTCTCTCCACCAAGCTCTACTTCGACGTCCCACTGTCCAAGGTTCCGCTTATCTACTCCAACTCTTACGACATTTCCTTTCTCGGCATAGAGAAATTGCATCCTTTTGATTCGTCTAAATGGGGAAGAATTTGTAAGTTCCTTGATTCTTTTGGTGTTCTGGATAAAAACCGTATTGTTGAGCCTCTAGAAGCTTCTAAAGATGACCTTCTTGTGGTACACTCAGAATCATATTTGAATAGTCTGAAGGAAAGTTCGAATGTTGCAAAGATAATCGAGGTCCCTCCTGTGGCATTATTTCCCAATTGTCTTGTGCAACATAAAGTTCTTTTCCCATTTAGGAAACAGGTTGGAGGAACTATATTGGCCGCAAAACTGGCAAAGGAGAGAGGGTGGGCCATTAATGTGGGAGGAGGTTTCCATCACTGTTCTGCAGAAAATGGCGGTGGATTTTGTGCTTATGCAGATATTTCTCTATGCATCCACTTCGCTTTTGTTCAGTTGAATATATCGAGGGTGATGATTATTGATCTTGATGCACATCAAGGAAATGGTCATGAAATTGACTTCGCCGATGATAACCGGGTCTACATTCTGGATATGTATAACCCTGGAATATATCCTTTGGATTATGAGGCAAGAAATTACATAAATCAGAAAGTTGAAGTGAAGAGCGGGACTCGTACAGAAGAGTACCTGCTGAAATTAGATGAAGCACTCGAGGTTGCTGGGCGAAGGTTTGACCCTGAGTTGTTAGTTTATAATGCTGGAACTGACATCCTAGAAGGTGACCCTTTAGGAAGGTTGAAGATTAGTCCTGATGGAATTGCTCTTAGAGATGAGAAAGTTTTTCGGTTTGCTCGTGAGAAGAACATTCCTATTGTCATGCTCACTTCAGGTGGATACATGAAGTCCAGTGCTAGAGTCATTGCAGATTCAATAGTCAATCTCGAGAAGAAATGCTTGATAGAAACGAGTGGAGGTTCAAAGGATGCTTAG 1053 0.4207 MSSSPSCSAADDSLMRNRILSTKLYFDVPLSKVPLIYSNSYDISFLGIEKLHPFDSSKWGRICKFLDSFGVLDKNRIVEPLEASKDDLLVVHSESYLNSLKESSNVAKIIEVPPVALFPNCLVQHKVLFPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSAENGGGFCAYADISLCIHFAFVQLNISRVMIIDLDAHQGNGHEIDFADDNRVYILDMYNPGIYPLDYEARNYINQKVEVKSGTRTEEYLLKLDEALEVAGRRFDPELLVYNAGTDILEGDPLGRLKISPDGIALRDEKVFRFAREKNIPIVMLTSGGYMKSSARVIADSIVNLEKKCLIETSGGSKDA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00501 350 CDD HDAC_classIV 52 335 IPR044150 GO:0004407|GO:0016575
Trre1g00501 350 FunFam Histone deacetylase 11 33 342 - -
Trre1g00501 350 Pfam Histone deacetylase domain 52 333 IPR023801 -
Trre1g00501 350 PRINTS Histone deacetylase superfamily signature 190 205 IPR000286 -
Trre1g00501 350 PRINTS Histone deacetylase superfamily signature 156 179 IPR000286 -
Trre1g00501 350 PRINTS Histone deacetylase superfamily signature 267 277 IPR000286 -
Trre1g00501 350 Gene3D Histone deacetylase domain 32 345 IPR037138 -
Trre1g00501 350 PANTHER HISTONE DEACETYLASE 2-RELATED 47 335 - -
Trre1g00501 350 SUPERFAMILY Arginase/deacetylase 32 334 IPR023696 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00501 Trre-Chr1 3741138 3745369 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00501 K11418 - gmx:100781276 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00501 1 3741138 3745369 Trre1g00501 1 3741138 3745369 ECH