Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00432 ATGGCAAATAATCCTCAACAACCTTCTAATATTCAGTTTCGGCCAGTGATTCATCCACAGCAAGGGCAACCATTTGTTCCAATGACTTCACAACAATTTGGACATGCAGGGCATGCTGTTCCTTCGTCTAACGTTGGGATGCCTGTTATTCAGGGTCAGCAATTGCAGTATTCTCAACAAATGCAACAGTTGACTCCAAGACAAAGTCAGCCCGGTCATCCTGTTTCTTCATCACAGGGTATACCTATGCCATATATTCAAACAAACAGGCCACTGACATCTGTTCCACAACATGCACATCAAGCTGTTCCCCACATAAGCAATCATATGCCTGGCTTGTCAGGAGCACCTCCTCAATCTTCATATACATTCGCACCATCTTATGGTCAGCAGCAAGACAACGCTAATGCATTGCCCCAATACCAGCATCCGCCTCAAATGCTTGCACCTCCTGCTGGACAACCTTGGTCGTCCTCAGTACCTCAGAGTGCTGCAGCTGTTACGCCAGTACAGCCGGCTGGAGTTCAATCATCTGGTACTGCATCAAATGATGTTGCAACTAATACCACTAACCAGAACTCTGCATCTGATTGGCAAGAGCATGTTGCTGGTGATGGGAGAAGATATTACTACAACAAGAATACAAGGCAATCTAGCTGGGAAAAACCTTTGGAGTTGATGTCACCTCTTGAGAGGGCTGACGCGTCAACTGTCTGGAAAGAGTTCACTTCTTCAGATGGAAGAAAGTATTATTACAACAAGGTTACTCAGCAATCAACATGGACGATACCAGAAGAACTCAAGCTTGCTCGTGAGCAGGCACATAAAACTGTTAGCCAGGGGACAGTGTCAGAAACAAGTGATACATCCAATGCTGCGGCCTCCTCTGCTGCAGCATCAACACCAGCTAATGCAGCTAGTTCGAACACTTTGACATCTAATGGTTTTGCTTCAAGCCCATCTTCTATTACACCAATTGTAGCTACCGATCAGCAACGGCTGGTTTCTGGATTATCGGGGACCTCTGTTTCCCATTCTGTAGTTACTTCAAGTACCACAGGGGTTGAACCAAGCACTGTTGTAACTGTGAGCACTACACCAACAACAGTTGCAGGAAGCTCAGGAGTAGCAGCCAGCTCACTTGATTCAAAAATTCCATCCATTGCTGAAAATCAAGCAACTCATGATTCTACTTCTGTCAATGGAGCAACTCTTCAAGATATGGAGGAAGCCAAAAGAGGACTTCCTGTAGCTGGGCCAACTAATGTGACTCCTTCAGAGGAGAAGACCAATGATGGTGAAACTTTTATATATGCAAATAAGCTGGAAGCAAAAAATGCATTTAAAGCGCTTCTGGAATCTGTGAATGTTCGTTCTGATTGGACGTGGGAACAGGCAATGAGAGAAATCATCAATGATAAAAGATATAATGCCCTGAAAACACTTGGTGAGCGAAAACAAGCTTTCAATGAGTATTTGGGCCAAAGGAAGAAGATAGAGGCTGAAGAGAAGCGCATAAAACAGAAAAAAGCCCGTGAAGAATTCACGAAGATGTTAGAAGAGTGCAAGGAGCTAACATCATCCACAAGATGGAGCAAAGCTATAAGTATGCTTGAAAATGATGAACGATTCAATGCTGTTGAAAGAGTAAGAGACCGGGAAGATTTATTTGAAAGCTACATGGTGGAACTTGAGAGAAAGGAAAAGGAAAATGCTGCTGAGGAACACCGGCGGAATTTAGCAGAATATAGGAAATTTCTGGAGTCCTGTGATTTTGTGAAGGTGAATAGTCATTGGCGAAAAATCCAAGATCGGCTAGAGGATGATGATAGATGCTTACTACTTGAAAAACTTGACCGCTTGCTTGTTTACCAGGACTATATTCGTGACTTGGAGAAGGAGGAAGAGGAACAAAAAAGGATACAGAAGGAACGAATCCATCGGGGTGAAAGGAAAAACCGTGATGCATTTCGCAAGTTGCTGGAAGAACATATTGCTGATGGAGTTCTTACTGCTAAAACACAATGGCGAGATTATTGCTTGAAGGTGAAAGAGTTGCCTCAATATCAAGCTGTTGCATCAAATACATCTGGTTCTACTCCGAGAGATTTATTTGAGGATGTTTTTGAAGATCTTGAAAAGAAGTATCATGAAGACAAGACACTCATAAAAGACACACTGAAGTCAGGCAAGATCACTGTAGTGACTACATCAGTATATGAGGACTTCAAATCTGCTATATTAGAAGAAGCTGCTTGCCAAACAATATCGGAAATCAATTTGAAGCTTTTATTTGAAGAGTTACTAGAAAGAGCTAAGGAGAAGGAGGAGAAAGAAGCTAAGAAACGCCAACGCCTTGCTGACGACTTTACTAACTTGTTATATTCATTCAAGGAAATTACTACCACTTCCATATGGGAGGATTGCAAGCCACTTTTTGAGGAGACACAAGAGTACAAGTCAATTGGGGACGAAAGCTCTAGCAGGGAAATTTTTGAAGAATACATTACATACTTAAAGGAAAAAGCTAAAGAGAAGGAACGCAAGCGTGAAGAGGAAAAGGCCAAGAAGGAAAAAGAAAGAGAAGAGAAAGAGAAACGGAAAGAGAAGGAGAAAAAAGAGAAGGACAGAGAACGTGAGAAAGAAAAATCGAAGGAACGACATAAGAAAGATGAATCAGATAGTGATAATCAAGACATAACTGACAGCCATGGTTATAGAGAGGAGAAGAAAAAAGATAAGGAAAAGGAAAGAAAGCATAGGAGAAGGCATCAGAGCAGTATAGATGACGTGGATTCCGAAAAGGACGATAAGGAAGAGTCTAGAAAATCGCGAAGACATGGAAGCGAACGCAAGAAGTCTAGGAAGCATGCAAACTCTCCTGATTCAGACAATGAAAGTCGGCATAAAAAACACAAGAGGGAGTATGGGGATGGTTCTAGGAGAACTGGATTGAATGACGAGCTTGAAGATGGGGAGCTTGGTGATGATGGTGGTGAGGTTTAG 3006 0.4238 MANNPQQPSNIQFRPVIHPQQGQPFVPMTSQQFGHAGHAVPSSNVGMPVIQGQQLQYSQQMQQLTPRQSQPGHPVSSSQGIPMPYIQTNRPLTSVPQHAHQAVPHISNHMPGLSGAPPQSSYTFAPSYGQQQDNANALPQYQHPPQMLAPPAGQPWSSSVPQSAAAVTPVQPAGVQSSGTASNDVATNTTNQNSASDWQEHVAGDGRRYYYNKNTRQSSWEKPLELMSPLERADASTVWKEFTSSDGRKYYYNKVTQQSTWTIPEELKLAREQAHKTVSQGTVSETSDTSNAAASSAAASTPANAASSNTLTSNGFASSPSSITPIVATDQQRLVSGLSGTSVSHSVVTSSTTGVEPSTVVTVSTTPTTVAGSSGVAASSLDSKIPSIAENQATHDSTSVNGATLQDMEEAKRGLPVAGPTNVTPSEEKTNDGETFIYANKLEAKNAFKALLESVNVRSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKIEAEEKRIKQKKAREEFTKMLEECKELTSSTRWSKAISMLENDERFNAVERVRDREDLFESYMVELERKEKENAAEEHRRNLAEYRKFLESCDFVKVNSHWRKIQDRLEDDDRCLLLEKLDRLLVYQDYIRDLEKEEEEQKRIQKERIHRGERKNRDAFRKLLEEHIADGVLTAKTQWRDYCLKVKELPQYQAVASNTSGSTPRDLFEDVFEDLEKKYHEDKTLIKDTLKSGKITVVTTSVYEDFKSAILEEAACQTISEINLKLLFEELLERAKEKEEKEAKKRQRLADDFTNLLYSFKEITTTSIWEDCKPLFEETQEYKSIGDESSSREIFEEYITYLKEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKEKDREREKEKSKERHKKDESDSDNQDITDSHGYREEKKKDKEKERKHRRRHQSSIDDVDSEKDDKEESRKSRRHGSERKKSRKHANSPDSDNESRHKKHKREYGDGSRRTGLNDELEDGELGDDGGEV 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00432 1001 SUPERFAMILY FF domain 502 570 IPR036517 -
Trre1g00432 1001 FunFam pre-mRNA-processing protein 40A isoform X1 440 495 - -
Trre1g00432 1001 ProSiteProfiles WW/rsp5/WWP domain profile. 233 266 IPR001202 GO:0005515
Trre1g00432 1001 MobiDBLite consensus disorder prediction 846 1001 - -
Trre1g00432 1001 MobiDBLite consensus disorder prediction 272 317 - -
Trre1g00432 1001 SUPERFAMILY WW domain 197 231 IPR036020 GO:0005515
Trre1g00432 1001 Gene3D FF domain 769 850 IPR036517 -
Trre1g00432 1001 MobiDBLite consensus disorder prediction 922 946 - -
Trre1g00432 1001 ProSiteProfiles WW/rsp5/WWP domain profile. 192 225 IPR001202 GO:0005515
Trre1g00432 1001 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 192 785 IPR039726 GO:0045292
Trre1g00432 1001 FunFam Pre-mRNA-processing protein 40A 641 722 - -
Trre1g00432 1001 FunFam Pre-mRNA-processing protein 40A 777 850 - -
Trre1g00432 1001 MobiDBLite consensus disorder prediction 149 198 - -
Trre1g00432 1001 SUPERFAMILY FF domain 568 637 IPR036517 -
Trre1g00432 1001 SUPERFAMILY FF domain 437 495 IPR036517 -
Trre1g00432 1001 CDD WW 196 225 IPR001202 GO:0005515
Trre1g00432 1001 MobiDBLite consensus disorder prediction 846 915 - -
Trre1g00432 1001 ProSiteProfiles FF domain profile. 648 711 IPR002713 -
Trre1g00432 1001 Pfam WW domain 239 264 IPR001202 GO:0005515
Trre1g00432 1001 Pfam WW domain 196 223 IPR001202 GO:0005515
Trre1g00432 1001 Coils Coil 624 644 - -
Trre1g00432 1001 FunFam Pre-mRNA-processing protein 40A 497 570 - -
Trre1g00432 1001 ProSiteProfiles FF domain profile. 441 495 IPR002713 -
Trre1g00432 1001 SMART ww_5 234 266 IPR001202 GO:0005515
Trre1g00432 1001 SMART ww_5 193 225 IPR001202 GO:0005515
Trre1g00432 1001 MobiDBLite consensus disorder prediction 955 989 - -
Trre1g00432 1001 Pfam FF domain 652 707 IPR002713 -
Trre1g00432 1001 Pfam FF domain 510 560 IPR002713 -
Trre1g00432 1001 Pfam FF domain 443 492 IPR002713 -
Trre1g00432 1001 Pfam FF domain 579 627 IPR002713 -
Trre1g00432 1001 Pfam FF domain 788 835 IPR002713 -
Trre1g00432 1001 Coils Coil 836 888 - -
Trre1g00432 1001 CDD WW 239 266 IPR001202 GO:0005515
Trre1g00432 1001 MobiDBLite consensus disorder prediction 275 317 - -
Trre1g00432 1001 Gene3D FF domain 571 640 IPR036517 -
Trre1g00432 1001 Gene3D FF domain 496 570 IPR036517 -
Trre1g00432 1001 Gene3D FF domain 641 722 IPR036517 -
Trre1g00432 1001 Gene3D FF domain 441 495 IPR036517 -
Trre1g00432 1001 ProSiteProfiles FF domain profile. 508 563 IPR002713 -
Trre1g00432 1001 MobiDBLite consensus disorder prediction 152 198 - -
Trre1g00432 1001 MobiDBLite consensus disorder prediction 58 81 - -
Trre1g00432 1001 Coils Coil 765 789 - -
Trre1g00432 1001 ProSitePatterns WW/rsp5/WWP domain signature. 198 223 IPR001202 GO:0005515
Trre1g00432 1001 ProSitePatterns WW/rsp5/WWP domain signature. 239 264 IPR001202 GO:0005515
Trre1g00432 1001 Coils Coil 557 586 - -
Trre1g00432 1001 SUPERFAMILY FF domain 776 845 IPR036517 -
Trre1g00432 1001 SUPERFAMILY FF domain 643 718 IPR036517 -
Trre1g00432 1001 ProSiteProfiles FF domain profile. 576 630 IPR002713 -
Trre1g00432 1001 SUPERFAMILY WW domain 226 267 IPR036020 GO:0005515
Trre1g00432 1001 Gene3D - 235 279 - -
Trre1g00432 1001 Gene3D - 191 234 - -
Trre1g00432 1001 SMART FF_2 441 495 IPR002713 -
Trre1g00432 1001 SMART FF_2 508 563 IPR002713 -
Trre1g00432 1001 SMART FF_2 783 838 IPR002713 -
Trre1g00432 1001 SMART FF_2 576 630 IPR002713 -
Trre1g00432 1001 SMART FF_2 650 711 IPR002713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00432 Trre-Chr1 3176790 3189414 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00432 K12821 - gmx:100806019 1305.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00432 1 3176790 3189414 Trre1g00432 1 3176790 3189414 ECH