Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g05089 ATGGCTGGTTTGACTAGAGTTCATAGTCTCCGTGAGAGGCTTGATGAAACCTTAACTGCTAACAGGAATGAAATTTTAGCTCTACTTTCAAGGATTGAAGCAAAGGGAAAAGGAATCTTGCAACATCACCAAATTATTGCTGAGTTTGAAGAAATTCCTGAAGAGAGTAGAAATAAGCTGAGTGATGGTGCTTTTGGTGAAGTTTTAAGATCCACACAGGAAGCTATAGTTTTGCCACCTTGGGTTGCTCTTGCGGTTAGACCAAGGCCAGGTGTTTGGGAATATCTTAGAGTGAATGTGCATGCTCTTGTTGTTGAAAATTTGCAACCTGCTGAGTTTTTGAAATTCAAGGAAGAACTTGTTGATGGAAGTGCTAATGGTAACTTTGTGCTTGAGTTGGATTTTGAACCATTTGCTGCATCTTTCCCTCGTCCTACTCTCAACAAGTCAATTGGAAATGGTGTGCAATTTCTCAACCGTCACCTTTCTGCAAAACTTTTCCATGACAAGGAGAGTTTACATCCACTTTTGGAATTTCTCAGACTTCACAGCTATGGGGGAAAGACATTGATGTTGAATGACAGAATTCAAAACCCTGATTCTCTTCAACATGTTCTGAGGAAAGCTGAAGAGTATCTAGGCACAGTTGCTCCTGAAACACCATACTCAGAATTTGAGCACACGTTCCAGGAGATTGGTTTGGAGAGGGGTTGGGGTGCCACCGCAGACCGCGTTCTCGAGTCCATTCAACTTCTCTTGGATCTTCTTGAGGCTCCTGACCCTTGCACCCTTGAGACATTCCTTGACAGAATCCCTATGGTCTTTAATGTTGTCATCCTTTCTCCTCATGGTTACTTTGCTCAAGATGACGTCTTGGGATACCCTGATACTGGTGGCCAGGTTGTTTACATCTTGGATCAAGTCCGTGCCTTGGAGAACGAGATGCTCCTTCGCATTAAGCAACAGGGATTGGATGTCGTCCCTCGCATTCTCATTATCACTCGTCTTCTCCCCGATGCAGTCGGTACCACTTGTGGCCAAAGGCTTGAGAAGGTCTACGGAACTGAACATTGCCACATTCTTCGAGTTCCCTTCAGAGATTCGAAGGGAATTGTTCGCAAGTGGATCTCACGATTCGAAGTCTGGCCATATCTAGAAACTTACACCGAGGATGTTGCTCACGAGCTTGCCAAAGAGTTGCATGGCAAGCCAGATCTGATTGTTGGAAACTACAGTGATGGAAACATTGTTGCTTCTTTGTTGGCACATAAATTAGGTGTCACTCAGTGTACCATTGCTCATGCACTTGAGAAGACCAAATATCCCGAATCCGATATTTACTGGAAAAAATTCGAAGAGAAGTATCACTTCTCGTGCCAATTTACCGCTGATCTGTTCGCAATGAACCACACCGATTTCATCATCACTAGTACCTTCCAAGAGATTGCTGGAAGCAAGGATACTGTTGGACAGTATGAGAGTCACACTGCCTTTACTCTTCCAGGACTCTACCGTGTCGTGCACGGTATTGATGTCTTTGATCCTAAGTTCAACATTGTATCTCCAGGAGCTGATCCAACCATTTACTTCCCTTACACCGAAACTAGCCGCAGGTTGACATCTTTTTACCCTGAAATCGAAGAGCTTCTTTACAGCTCAGTGGAGAACACAGAGCACATATGTGTGTTGAAGGACCGCAACAAACCAATTATCTTCACCATGGCAAGGTTGGACCGTGTGAAGAACATTACAGGACTAGTTGAGTGGTACGGAAAGAACGCCAAGCTTCGCGAGTTGGTGAACCTCGTTGTTGTTGCCGGAGACAGGAGGAAGGAGTCGAAGGACTTGGAAGAGATAGCTGAGATGAAGAAGATGTATGGCTTAATCGAAACCTACAAGTTGAACGGCCAATTCAGATGGATTTCCTCTCAGATGAACCGTGTCAGAAACGGAGAACTTTACCGCGTCATTTGTGACACAAAGGGAGCTTTCGTGCAGCCTGCTGTGTACGAAGCTTTCGGTTTAACAGTTGTTGAGGCCATGGCTACTGGATTGCCAACATTTGCAACACTAAATGGTGGACCTGCTGAGATCATTGTCCATGGAAAATCTGGATTCCACATCGATCCATACCATGGCGAACGTGCTGCTGATCTCCTTGTTGAATTCTTCGAGAAGGTCAAGGTTGATCCATCTCACTGGGACAAGATCTCTAATGGTGGTCTCCAACGTATCGAAGAGAAATATACATGGAGAATTTACTCTCAGAGGCTTCTTACTCTCACTGGTGTCTATGGCTTCTGGAAGCATGTTTCTAACCTTGATCGCCTTGAGAGCCGCCGTTATCTTGAGATGTTCTATGCTCTCAAGTACCGCAAATTGGCTGAGTCTGTGCCCCTAGCTGTTGAGGAGTAA 2415 0.4493 MAGLTRVHSLRERLDETLTANRNEILALLSRIEAKGKGILQHHQIIAEFEEIPEESRNKLSDGAFGEVLRSTQEAIVLPPWVALAVRPRPGVWEYLRVNVHALVVENLQPAEFLKFKEELVDGSANGNFVLELDFEPFAASFPRPTLNKSIGNGVQFLNRHLSAKLFHDKESLHPLLEFLRLHSYGGKTLMLNDRIQNPDSLQHVLRKAEEYLGTVAPETPYSEFEHTFQEIGLERGWGATADRVLESIQLLLDLLEAPDPCTLETFLDRIPMVFNVVILSPHGYFAQDDVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDVVPRILIITRLLPDAVGTTCGQRLEKVYGTEHCHILRVPFRDSKGIVRKWISRFEVWPYLETYTEDVAHELAKELHGKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKFEEKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADPTIYFPYTETSRRLTSFYPEIEELLYSSVENTEHICVLKDRNKPIIFTMARLDRVKNITGLVEWYGKNAKLRELVNLVVVAGDRRKESKDLEEIAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRVICDTKGAFVQPAVYEAFGLTVVEAMATGLPTFATLNGGPAEIIVHGKSGFHIDPYHGERAADLLVEFFEKVKVDPSHWDKISNGGLQRIEEKYTWRIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g05089 804 Pfam Glycosyl transferases group 1 562 725 IPR001296 GO:0016757
Trre15g05089 804 Gene3D Glycogen Phosphorylase B; 525 751 - -
Trre15g05089 804 NCBIfam sucrose synthase 22 800 IPR012820 GO:0005985|GO:0016157
Trre15g05089 804 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 293 760 - -
Trre15g05089 804 FunFam Sucrose synthase 9 143 - -
Trre15g05089 804 PANTHER - 5 802 IPR012820 GO:0005985|GO:0016157
Trre15g05089 804 Gene3D Glycogen Phosphorylase B; 278 794 - -
Trre15g05089 804 Gene3D - 23 143 - -
Trre15g05089 804 FunFam Sucrose synthase 144 273 - -
Trre15g05089 804 Gene3D - 144 273 - -
Trre15g05089 804 FunFam Sucrose synthase 278 557 - -
Trre15g05089 804 Pfam Sucrose synthase 6 551 IPR000368 GO:0005985|GO:0016157
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g05089 Trre-Chr15 60617853 60621918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g05089 4 804 Glycosyltransferase AT3G43190 83.770 0.0 1404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g05089 K00695 - gmx:547508 1515.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05089 15 60617853 60621918 Trre15g05089 15 60617853 60621918 ECH
Trre15g05089 15 60617853 60621918 Trre3g02695 3 28552035 28556359 PCT