Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04972 ATGACACTTGTTTCACTTTTCCTCACCGCCACTAAACTCGCCGGAGCTTTAGTTACTCTCACCGTCGCCGCCAATGCTTTCTCCTTCTCTCGTTTCCGTAACAAAAATCTTCGCCGATTTCGTTCCCCTATTGATGAATCCTCTGATACCCTCGCCGATTTCAACATTACCGAAGGAGAAGATGGGTTTTTCTTTGGGCTGGCGACAGCGCCTGCACATGTTGAGGACAAGCTAGATGATGCTTGGATTCAATTTGCTGAGCAAGAAAGTGTTGTTGGTGCTGAGCAGAAAGTGGATGCTTTGATGGGCTCTGCCACTGCTGACGGTGGGTCTCAACAAGCTGTATCAACTCCACAACATGCTAGGAAGGGAAACAAGAAGTCTCTTAAGGTAGCTATGGAGGCCATGATCAGAGGATTTGAGAAATACATGGAAGTAGATGAACACGAAGGCGAAGAAGAATCCATTCCAAACGTAACTGCTTGGCATAATGTTCCTCACCCGGAGGAGAGGTTAAGGTTTTGGTCTGATCCTGATACAGAACTAAAATTGGCCAAGGGTACTGGTGTTACTGTTTTCCGTATGGGAATTGACTGGTCAAGAATCATGCCCAAGGAGCCAGTAAATGGCCTTAAAGAATCTGTTAACTATGCTGCATTGGAGCGTTATAAGTGGATTATCAATAGGGTTCGATCATATGGAATGAAGGTGATGCTCACTCTTTTTCATCACTCACTTCCACCCTGGGCAGGTGATTACGGAGGTTGGAAGCTGGAAAAGACGGTGGATTATTTCATGGACTTTACCAGGCTTGTTGTTGACAGTGTATCAGATTTAGTAGACTATTGGATAACATTTAACGAGCCCCATGTCTTCTGTATGCTTACTTATTGTTCTGGAACCTGGCCTGGCGGACATCCTGATATGCTGGAGGCTGCTACTTCCGCACTTCCTACAGGTGTTTTCCAGCAGGCCATGCATTGGATATCCGTTGCACACTTAAAGGCATATGATTACATCCACGAACACAGTAACTCATCAAATCCAATAGTTGGTGTTGCACATCATGTGTCGTTTATGCGACCGTATGGTCTGTTTGATATTGCTTCTGTTTTATTGGCTAATTCATTGAGTCTCTTCCCATTCATTGATGAAATATCCAAAAAGCTGGACTTTATAGGCGTTAACTATTATGGCCAGGAAGTGGTTTCAGGTGCTGGCCTAAAGCTGGTGGAAAATGATGAGTACAGTGAATCGGGTCGTGGGGTATATCCTGATGGATTATATCGCATGTTGCTTCAGTTCCATGAAAGATACAAGCATCTAAATATGCCCTTCATTATTGCTGAAAATGGAATTGCAGATGAAACTGATCTGATCCGTCGGCCGTATCTCTTGGAGCATTTGCTTGCTGTTTATGCAGCTATGAATGAGGGTGTGTCTGTGCTTGGTTACCTATTCTGGACTATTTCTGATAACTGGGAATGGGCTGATGGATATGGCCCCAAGTTTGGGCTTGTTGCAGTTGACAGGGCAAATAATCTTGCACGAATCCCTCGCCCTTCTTACCATCTGTTTTCTAAAGTTGTGAATACCGGTAAAGTTACACGTGAAGATCGTGAAGAAGCTTGGAATGAACTTCAAAGAGCTGCTAAAGAGAAGCAGACAAGACCATTTTATCGGGCTGTGGATAAAAATGGTTTAATGTTGGCAGGTGGACTTGATGAACCCATACAGCGACCTTATATAGAAAGAGATTGGCGGTTTGGTCATTATGAGATAGATGGCCTGCAAGATCACTTAAGCCGCTTCTCAAGATTCACCATTCAACGATTGTCCCTAAAAAGGAAAAAGAAATCTCAAAAGAAGGAATTGGTTCTTAACCCTATTTGA 1893 0.4379 MTLVSLFLTATKLAGALVTLTVAANAFSFSRFRNKNLRRFRSPIDESSDTLADFNITEGEDGFFFGLATAPAHVEDKLDDAWIQFAEQESVVGAEQKVDALMGSATADGGSQQAVSTPQHARKGNKKSLKVAMEAMIRGFEKYMEVDEHEGEEESIPNVTAWHNVPHPEERLRFWSDPDTELKLAKGTGVTVFRMGIDWSRIMPKEPVNGLKESVNYAALERYKWIINRVRSYGMKVMLTLFHHSLPPWAGDYGGWKLEKTVDYFMDFTRLVVDSVSDLVDYWITFNEPHVFCMLTYCSGTWPGGHPDMLEAATSALPTGVFQQAMHWISVAHLKAYDYIHEHSNSSNPIVGVAHHVSFMRPYGLFDIASVLLANSLSLFPFIDEISKKLDFIGVNYYGQEVVSGAGLKLVENDEYSESGRGVYPDGLYRMLLQFHERYKHLNMPFIIAENGIADETDLIRRPYLLEHLLAVYAAMNEGVSVLGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFSKVVNTGKVTREDREEAWNELQRAAKEKQTRPFYRAVDKNGLMLAGGLDEPIQRPYIERDWRFGHYEIDGLQDHLSRFSRFTIQRLSLKRKKKSQKKELVLNPI 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04972 630 PANTHER GLYCOSYL HYDROLASE 65 363 IPR001360 GO:0004553|GO:0005975
Trre15g04972 630 Pfam Glycosyl hydrolase family 1 179 363 IPR001360 GO:0004553|GO:0005975
Trre15g04972 630 Pfam Glycosyl hydrolase family 1 384 532 IPR001360 GO:0004553|GO:0005975
Trre15g04972 630 SUPERFAMILY (Trans)glycosidases 161 538 IPR017853 -
Trre15g04972 630 MobiDBLite consensus disorder prediction 106 122 - -
Trre15g04972 630 Gene3D Glycosidases 130 550 - -
Trre15g04972 630 PRINTS Glycosyl hydrolase family 1 signature 389 403 IPR001360 GO:0004553|GO:0005975
Trre15g04972 630 PRINTS Glycosyl hydrolase family 1 signature 479 496 IPR001360 GO:0004553|GO:0005975
Trre15g04972 630 PRINTS Glycosyl hydrolase family 1 signature 458 469 IPR001360 GO:0004553|GO:0005975
Trre15g04972 630 PRINTS Glycosyl hydrolase family 1 signature 503 515 IPR001360 GO:0004553|GO:0005975
Trre15g04972 630 PRINTS Glycosyl hydrolase family 1 signature 446 454 IPR001360 GO:0004553|GO:0005975
Trre15g04972 630 MobiDBLite consensus disorder prediction 105 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04972 Trre-Chr15 59667151 59671777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04972 4 606 Glycoside Hydrolase AT3G06510 62.656 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04972 K21362 - gmx:100792401 1060.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04972 15 59667151 59671777 Trre15g04972 15 59667151 59671777 ECH