Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04946 ATGGCGAAGCACGAAGAACTTCCGATCCCGATTTACAATAACCTAGAGCCTGTTTACGGCGGAGGTTCATCGCTCGAAGAAGCTCAACTTCGTTTCGATATTCTCAAATCCAAATTCAAAGAATTCTTCGGTCACACTCCTCAATTATTCGCTCGTTCACCTGGGAGAGTGAACTTGATTGGGGAACACATTGATTATGAAGGATATTCGGTGTTGCCTATGGCTATTCGTCAAGATACGATTATTGCTATTAGAAAGAATGAATCTGAAAAGGTTCTCAGGATCGCTAATGTCAATGATAAATATTCCATGTGTACTTACCCTGCTGATCCTCTTCAGGAATTGGACTTGAAGAATCACAAATGGGGCCATTATTTCATATGTGGGTACAAAGGTTTTTATGACTTTGCAAAATTGAAAGGAGTGAATGTTGGTGAACCTGTTGGACTTGATGTTCTTGTTGATGGGACCGTGCCGACAGGTTCAGGACTATCAAGCTCTGCAGCATTTGTTTGCTCTTCCACGATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCAAAGAAAGAAATTGCACAAGTTACATGCGATTGTGAACGACATATTGGGACGCAATCTGGTGGGATGGATCAGGCAATCTCTGTAATGGCCAAGACCGGGTTTGCAGAATTGATTGATTTCAACCCAATTCGTGCGACAGATGTGCAACTGCCTGATGGTGGGACTTTTGTTATTGGGCATTCTTTGGCAGAGTCTCAGAAGGCTGTTACTGCTGCCACAAATTATAATAACAGGGTTGTTGAATGCCGTTTAGCTGCTATTGTGCTTGCTATAAAGCTAGGAATGAAACCAGCTGAGGCTATATCAAAAGTGAAAACACTGTCCGATGTTGAAGGGTTATGTGTATCATATGCTGGTACTAAAAACTCATCTGATCCTGTACTTGCTATAAAGGAATATTTGAAAGAAGAACCATATACAGCTGAAGAAATTGAAGCTGTTACTGGGGAAAAGCTGACTACATTTTTGAATATTAATGCATCTTACTTGGACGTCATAAAAGCTGCAAAGCAATACAAGTTACATCAGAGAGCTGCTCATGTGTATTCAGAAGCCAAGAGGGTATATGCTTTCAAGGATGTTGTATCATCAAATCTAAGCGATGAGGAGAAGCTAAAGAAACTTGGCGACCTTATGAACGAGAGTCATTATAGCTGCAGTAATTTATATGAATGCAGCTGTCCGGAGTTGGAAGAACTTACAAAGATCTCTCGCGACAATGGTGCTTTTGGGGCAAGGCTGACTGGAGCTGGGTGGGGTGGTTGTGCTGTTGCTTTGGTGAAAGAGAGCATAGTTCCACAATTCATCCTTAATTTGAAGGAACATTACTATCAACATAGGATAGACAAGGGCGTCATTAAGAAGGACGATCTTGGTCTTTACGTATTTGCTTCCAAGCCATCAAGTGGTTCTGCCATCTTCAAGTTTTAG 1491 0.4152 MAKHEELPIPIYNNLEPVYGGGSSLEEAQLRFDILKSKFKEFFGHTPQLFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIIAIRKNESEKVLRIANVNDKYSMCTYPADPLQELDLKNHKWGHYFICGYKGFYDFAKLKGVNVGEPVGLDVLVDGTVPTGSGLSSSAAFVCSSTIAIMAAFDVNFPKKEIAQVTCDCERHIGTQSGGMDQAISVMAKTGFAELIDFNPIRATDVQLPDGGTFVIGHSLAESQKAVTAATNYNNRVVECRLAAIVLAIKLGMKPAEAISKVKTLSDVEGLCVSYAGTKNSSDPVLAIKEYLKEEPYTAEEIEAVTGEKLTTFLNINASYLDVIKAAKQYKLHQRAAHVYSEAKRVYAFKDVVSSNLSDEEKLKKLGDLMNESHYSCSNLYECSCPELEELTKISRDNGAFGARLTGAGWGGCAVALVKESIVPQFILNLKEHYYQHRIDKGVIKKDDLGLYVFASKPSSGSAIFKF 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04946 496 Gene3D - 37 235 IPR014721 -
Trre15g04946 496 Pfam GHMP kinases C terminal 391 464 IPR013750 -
Trre15g04946 496 SUPERFAMILY GHMP Kinase, C-terminal domain 242 472 IPR036554 -
Trre15g04946 496 ProSitePatterns Galactokinase signature. 55 66 IPR019741 -
Trre15g04946 496 NCBIfam galactokinase 35 465 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Trre15g04946 496 Gene3D - 261 411 - -
Trre15g04946 496 PANTHER MEVALONATE KINASE/GALACTOKINASE 6 492 - -
Trre15g04946 496 SUPERFAMILY Ribosomal protein S5 domain 2-like 29 239 IPR020568 -
Trre15g04946 496 PIRSF Galactokinase 23 496 IPR006206 GO:0005524|GO:0005737|GO:0016301|GO:0016773
Trre15g04946 496 PRINTS Galactokinase signature 149 167 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Trre15g04946 496 PRINTS Galactokinase signature 363 377 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Trre15g04946 496 PRINTS Galactokinase signature 55 73 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Trre15g04946 496 Pfam Galactokinase galactose-binding signature 38 86 IPR019539 -
Trre15g04946 496 FunFam Galactokinase 261 411 - -
Trre15g04946 496 Gene3D - 236 465 - -
Trre15g04946 496 FunFam galactokinase-like isoform X1 37 235 - -
Trre15g04946 496 ProSitePatterns GHMP kinases putative ATP-binding domain. 158 169 IPR006203 GO:0005524
Trre15g04946 496 PRINTS Mevalonate kinase family signature 156 178 - -
Trre15g04946 496 PRINTS Mevalonate kinase family signature 53 77 - -
Trre15g04946 496 PRINTS Mevalonate kinase family signature 198 217 - -
Trre15g04946 496 PRINTS Mevalonate kinase family signature 431 448 - -
Trre15g04946 496 Pfam GHMP kinases N terminal domain 151 216 IPR006204 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04946 Trre-Chr15 59471358 59477705 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04946 K18674 - gmx:100803230 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04946 15 59471358 59477705 Trre15g04946 15 59471358 59477705 ECH