Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04931 ATGTGTCCTTCTGGCAGAACCCTCCGTCCACAACCTCCCACAACCGATTTCCGACCGGCATTCGACATTCTCGACACCGATTGCGACGGCAAAATAAGCCGTGACGATCTCCGTTCATTCTACGCAACCATCAGCAGCGGAGGCGTCTCTGCCGACGCAATCGGTGCCATGATGTCGGTTGCGGACACGAACATGGACGGATTCGTGGAATACGAGGAATTCGAGCGTGTGGTTAGTGGAAACAATGAAAAGAAACCGTTAGGATGTGGAGCCATGGAAGATGTGTTCAAGGTGATGGATAGAGATGGTGATGGTAAACTTAGTCATGAAGATTTGAAGAATTATATGAATTGGGCTGGTTTTGCTGCAACCGATGAAGAGATAAATGCTATGATTAAATTTGGTGGTGGTGATCAAAACGGCGGCGTTAGCTTCGATGAATACATGCTAACTAGAAGAAAAAGAAAGAGTCTCCCAATAGAACGAAGGATCCCAACTCCTCCCAATAACAGTTCAATTGGTAGTGACGGGTTTGAAAATACATAA 546 0.4634 MCPSGRTLRPQPPTTDFRPAFDILDTDCDGKISRDDLRSFYATISSGGVSADAIGAMMSVADTNMDGFVEYEEFERVVSGNNEKKPLGCGAMEDVFKVMDRDGDGKLSHEDLKNYMNWAGFAATDEEINAMIKFGGGDQNGGVSFDEYMLTRRKRKSLPIERRIPTPPNNSSIGSDGFENT 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04931 181 MobiDBLite consensus disorder prediction 156 181 - -
Trre15g04931 181 ProSitePatterns EF-hand calcium-binding domain. 25 37 IPR018247 -
Trre15g04931 181 ProSiteProfiles EF-hand calcium-binding domain profile. 49 84 IPR002048 GO:0005509
Trre15g04931 181 FunFam Calmodulin-2 A 11 155 - -
Trre15g04931 181 PANTHER CALCIUM BINDING PROTEIN 92 149 - -
Trre15g04931 181 Gene3D - 6 85 - -
Trre15g04931 181 Pfam EF-hand domain pair 16 78 IPR002048 GO:0005509
Trre15g04931 181 ProSitePatterns EF-hand calcium-binding domain. 100 112 IPR018247 -
Trre15g04931 181 Pfam EF hand 93 116 IPR002048 GO:0005509
Trre15g04931 181 ProSiteProfiles EF-hand calcium-binding domain profile. 12 47 IPR002048 GO:0005509
Trre15g04931 181 SUPERFAMILY EF-hand 16 151 IPR011992 -
Trre15g04931 181 CDD EFh 16 79 IPR002048 GO:0005509
Trre15g04931 181 CDD EFh 93 147 IPR002048 GO:0005509
Trre15g04931 181 SMART efh_1 16 44 IPR002048 GO:0005509
Trre15g04931 181 SMART efh_1 91 119 IPR002048 GO:0005509
Trre15g04931 181 SMART efh_1 53 81 IPR002048 GO:0005509
Trre15g04931 181 SMART efh_1 127 155 IPR002048 GO:0005509
Trre15g04931 181 MobiDBLite consensus disorder prediction 164 181 - -
Trre15g04931 181 ProSiteProfiles EF-hand calcium-binding domain profile. 92 122 IPR002048 GO:0005509
Trre15g04931 181 Gene3D - 86 153 - -
Trre15g04931 181 ProSitePatterns EF-hand calcium-binding domain. 62 74 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04931 Trre-Chr15 59349350 59350402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04931 1 149 EF-hand Containing Proteins AT5G49480 56.604 6.02e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04931 K02183 - gmx:100527230 215.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04931 15 59349350 59350402 Trre15g04931 15 59349350 59350402 ECH