Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04921 ATGAACTCAATTCCTTCTCCTCCATCTGCTACACTCTTCACTCAGTCCAAAAATCCTAACTATCTTTTCAAATTCAATCTCAAAGTTCCCATTTTACCCTTCCATTCTTCATCTTCCAATCTCACCACACCATGTTGCACTCTCAAAGACTCAACTTCAGTTTTGGACAAAAATGCCCCTTCCTCCTCAGAACAGAATTCCCTCAATTACATTCCACCAAAAGACTCAAACTTTGAAGGAAATCTCGTGGTTCGCCGACCGGTGAAGGAATTTTCCGGCCAAAACTCCGATGAGAAGGAAGAACAAGATAATGAAGCAGAGGAAGTGGAACCAAAACCAAAACTAAAACCAAAAGCTTCTTCAATTGATGCCGGACTAACGAAATTTGCGAAGAAGATGCCGATGTTTGAACCGGGGAGGGTTGAATCAGATTCAACAGAGAAGCCTTTGACTGTGAATTTGGACTTGGCGTTATATAAGGCCAAGGTTTTGACAAGAAACTTTCGTTATGAAGAAGCGGAGAAAATACTTCAGGAGTGTATATGCTATTGGCCTGAAGATGGTAGACCTTATGTGGCACTTGGGAAAGTTTTGAGTAAGCAATCTAAAACAAGTCAAGCTAGAGAGCTTTATGAGAAGGGTTGCCAGGCTACTCAGGGTGAAAATTCCTTCATTTGGCAGGTTTGGGCTGTTCTTGAAAATAGAATGGGAAATGTTAGAAGAGCAAGAGAGCTTTTCGATGCTGCAACGGTTGCTGATAAGAAGCATGTTGCTGCCTGGCATGGTTGGGCAATTCTAGAGTTAAAGCAGGGAAATATACAGAAGGCAAGGAGTCTGCTTTCTAAAGGTCTTCAATATTGTGGACAAAATGAGTATATATACCAAACACTTGCATTGCTTGAAGCTAAGGCAAATAGATATCAGCAGGCTCGATATTTATTCAATCAGGCCACAAAGTGTAATCCAAAAAGTTGTGCTAGTTGGCTTGCTTGGGCTCAAATGGAGGTAGAACAGGAAAATAATCGTACCGCGAGGAAACTGTTTGAGAATGCAGTGCAAGCAAGTCCTAAAAATAGGTTTGCTTGGCATGTATGGGGCATCTTTGAAGCAAACTTAGGAAGGATTGACAAGGGAAAAAAACTACTAGTGATTGGCCATGCTCTAAATCCGAGGGATGCTGTTCTCCTGCAGTCTCTTGCATTAATAGAATATAAACACTCAAGTGCAAACCGTGCTCGTGTTTTATTCAGGAGAGCATCTGAATTAGATCCAAAGCATCAACCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAAGAAGGAAACATGAACACAGCTAGAGAGTTATACAAAAGAGCTTTATCAATTGATCCAAACACTGAAAGTGCTGCAAGGTGTCTCCAGGCATGGGGTGTTCTGGAGCAGAGAGTTGGCAATCTTTCAGCTGCTCGTAGATTATTTAGATCCTCATTGAATATAAATTCTCAGAGTTATGTGACATGGATGACTTGGGCATCACTAGAGGAAGATCAAGGAAATCCTGTGCGTGCTGAAGAGATTCGTAACCTTTATTTCCAGCAGCGCACGGAAGTTGTAGATGATGCTTCGTGGGTTATGGGATTCTTAGATATTTTAGACCCTGCCATTGACAGCTTGAAGAGACTTTTGAAGATGGACCCGAATTCGTTCAACATGCAACAAGATGCCATCATGAGAAATATTACCAGACTGAAAAAAGACACAGTTGATTATTCTAGTGACAGCGATGGTGATGATGATATGGACAATGAAAGTGAGTTTGATTTGGACCGTTTCATTATGGAAAGGTTATCCTTAGATGTATCGAAGTTGGAAGTTCAACTGGAAACACCGAAAATTTCCTCTCCGAACAAAATTTTGTCTCCAAGAAGGATATGGCGACCAGATAATAGAATTGCCAACAAAATTTAA 1950 0.4113 MNSIPSPPSATLFTQSKNPNYLFKFNLKVPILPFHSSSSNLTTPCCTLKDSTSVLDKNAPSSSEQNSLNYIPPKDSNFEGNLVVRRPVKEFSGQNSDEKEEQDNEAEEVEPKPKLKPKASSIDAGLTKFAKKMPMFEPGRVESDSTEKPLTVNLDLALYKAKVLTRNFRYEEAEKILQECICYWPEDGRPYVALGKVLSKQSKTSQARELYEKGCQATQGENSFIWQVWAVLENRMGNVRRARELFDAATVADKKHVAAWHGWAILELKQGNIQKARSLLSKGLQYCGQNEYIYQTLALLEAKANRYQQARYLFNQATKCNPKSCASWLAWAQMEVEQENNRTARKLFENAVQASPKNRFAWHVWGIFEANLGRIDKGKKLLVIGHALNPRDAVLLQSLALIEYKHSSANRARVLFRRASELDPKHQPVWFAWGWMEWKEGNMNTARELYKRALSIDPNTESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYVTWMTWASLEEDQGNPVRAEEIRNLYFQQRTEVVDDASWVMGFLDILDPAIDSLKRLLKMDPNSFNMQQDAIMRNITRLKKDTVDYSSDSDGDDDMDNESEFDLDRFIMERLSLDVSKLEVQLETPKISSPNKILSPRRIWRPDNRIANKI 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04921 649 SMART hat_new_1 407 439 IPR003107 GO:0006396
Trre15g04921 649 SMART hat_new_1 271 303 IPR003107 GO:0006396
Trre15g04921 649 SMART hat_new_1 441 476 IPR003107 GO:0006396
Trre15g04921 649 SMART hat_new_1 478 510 IPR003107 GO:0006396
Trre15g04921 649 SMART hat_new_1 202 235 IPR003107 GO:0006396
Trre15g04921 649 SMART hat_new_1 305 337 IPR003107 GO:0006396
Trre15g04921 649 SMART hat_new_1 237 269 IPR003107 GO:0006396
Trre15g04921 649 SMART hat_new_1 339 371 IPR003107 GO:0006396
Trre15g04921 649 SMART tpr_5 325 358 IPR019734 GO:0005515
Trre15g04921 649 SMART tpr_5 464 497 IPR019734 GO:0005515
Trre15g04921 649 SMART tpr_5 257 290 IPR019734 GO:0005515
Trre15g04921 649 SMART tpr_5 223 256 IPR019734 GO:0005515
Trre15g04921 649 SMART tpr_5 427 460 IPR019734 GO:0005515
Trre15g04921 649 SMART tpr_5 393 426 IPR019734 GO:0005515
Trre15g04921 649 SMART tpr_5 188 221 IPR019734 GO:0005515
Trre15g04921 649 SMART tpr_5 291 324 IPR019734 GO:0005515
Trre15g04921 649 SMART tpr_5 154 187 IPR019734 GO:0005515
Trre15g04921 649 FunFam High chlorophyll fluorescent 107 145 354 - -
Trre15g04921 649 MobiDBLite consensus disorder prediction 55 74 - -
Trre15g04921 649 SUPERFAMILY TPR-like 170 402 IPR011990 GO:0005515
Trre15g04921 649 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 35 643 IPR044624 GO:0003729|GO:0006397
Trre15g04921 649 SUPERFAMILY TPR-like 344 563 IPR011990 GO:0005515
Trre15g04921 649 Gene3D Tetratricopeptide repeat domain 395 565 IPR011990 GO:0005515
Trre15g04921 649 Gene3D Tetratricopeptide repeat domain 149 394 IPR011990 GO:0005515
Trre15g04921 649 Pfam Tetratricopeptide repeat 429 459 IPR019734 GO:0005515
Trre15g04921 649 ProSiteProfiles TPR repeat profile. 291 324 IPR019734 GO:0005515
Trre15g04921 649 ProSiteProfiles TPR repeat profile. 427 460 IPR019734 GO:0005515
Trre15g04921 649 MobiDBLite consensus disorder prediction 90 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04921 Trre-Chr15 59269406 59273615 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04921 - - vun:114175850 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04921 15 59269406 59273615 Trre15g04921 15 59269406 59273615 ECH