Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04897 ATGGTTACGAAAAACGACATAGATGAACTTCCAAAGAACGCAGCAAACTACACAGCTTTAACACCGCTATGGTTCTTAGAAAGAGCAGCTCAAGTTCATCCAACCAGAAAATCGATCATCCATGGATCCCTTCACTACACGTGGCATCAGACTTATCAACGTTGCCGTCGATTCGCTTCCGCTCTTTCTAACCACTCCATCTCTCTCGGACACACTGTAGCTGTTATTGCACCAAATATTCCAGCTCTCTATGAAGCTCATTTTGGGATTCCAATGGCAGGGGCAGTGTTGAACCCTGTGAATATAAGGCTAAATGCATCCACAATAGCTTTTCTTCTTGGTCATTGCAATGCATCAGTTGTAATTGTGGATCAAGAGTTCTTTTCATTGGCGGAAGAAGCTTTGAAAATATGGTCCGACAAAACTAAAACATTCAAACCTCCCATTTTAATTGTCATTGGCGATGAAAACTGTGACCCTGAGTCGCTTAGATATGCGTTGAGCAAAGGAGCCATTGGTTATGAGGACTTTCTTCGAAGTGGTGACCCTGAATATGATTGGAAACCACCAGAGGATGAGTGGCAGAGCATTGCTTTGGGTTACACGTCTGGGACCACTGCTAGTCCAAAAGGTGTGGTTTTGCATCACCGTGGAGCGTATCTCATGTCTCTTAGTGGTGCACTTATTTGGGGAATGAATGAAGGAGCTGTATATCTTTGGACTCTACCCATGTTTCATTGCAACGGTTGGTGCTACACTTGGACACTTGCAGCGATCTTTGGCACAAATATATGCCTCCGCCAGGTATCAGCAAGGGCAGTATACGAAGCCATTACCAAGTACAAAGTGACTCATTTTTGTGCAGCGCCAGTGGTGCTTAACTCGATAATTAATGCTCCGGCTGAGGAAACCATACTTCCTCTACCTCATGTTGTACATGTGAATACTGCTGGTGCTGCTCCTCCTCCTTCTGTGCTTTCCGGCATGTCTGAACGAGGATTTCGCGTCACACATACTTACGGTCTTTCAGAAACCTATGGCCCGTCTGTCTATTGTGCTTGGAAACCAGAGTGGGACTCACTTCCACCAGAATCCCGAGCCCGACTCCATGCAAGACAAGGGGTTAGGTACGTTGCTTTGGAAGGCCTGGATGTAGTGAACACGAAAACCGCGCAGCCTGTTCCTGCTGATGGTAAAACTGTTGGTGAGATCGTGATGCGCGGTAATGCTGTGATGAAAGGTTACTTAAAGAATCCTAAAGCTAATGAAGAGAGCTTTGCAAATGGATGGTACCATTCCGGTGATCTTGCTGTAAAGCATCCAGATGGATATATAGAAATTAAAGACAGATCAAAGGACATCATCATCTCAGGCGCTGAAAATATCAGCAGTGTAGAGGTAGAGAATGCTCTGTACGCGCATCCTGCGATACTGGAGACATCAGTGGTTGCAAGGCCAGATGAGAAATGGGGCGAGTCTCCATGTGCGTTTGTGACATTAAAGCCCGGAGTGGATAGTAGTAACGAGCAGCGTCTAGTTGAGGACATATTGAAATTCTGCAAGGCCAAGATGCCTGCTTATTGGGTTCCAAAATCGGTTGTCTTTGGACCATTACCTAAGACAGCTACTGGGAAGGTACAGAAGCATCTGCTGAGGGCCAAGGCAAAGGAGATGGGACCTGTCAAGAATAAGATGAGCAAGTTGTAA 1707 0.4587 MVTKNDIDELPKNAANYTALTPLWFLERAAQVHPTRKSIIHGSLHYTWHQTYQRCRRFASALSNHSISLGHTVAVIAPNIPALYEAHFGIPMAGAVLNPVNIRLNASTIAFLLGHCNASVVIVDQEFFSLAEEALKIWSDKTKTFKPPILIVIGDENCDPESLRYALSKGAIGYEDFLRSGDPEYDWKPPEDEWQSIALGYTSGTTASPKGVVLHHRGAYLMSLSGALIWGMNEGAVYLWTLPMFHCNGWCYTWTLAAIFGTNICLRQVSARAVYEAITKYKVTHFCAAPVVLNSIINAPAEETILPLPHVVHVNTAGAAPPPSVLSGMSERGFRVTHTYGLSETYGPSVYCAWKPEWDSLPPESRARLHARQGVRYVALEGLDVVNTKTAQPVPADGKTVGEIVMRGNAVMKGYLKNPKANEESFANGWYHSGDLAVKHPDGYIEIKDRSKDIIISGAENISSVEVENALYAHPAILETSVVARPDEKWGESPCAFVTLKPGVDSSNEQRLVEDILKFCKAKMPAYWVPKSVVFGPLPKTATGKVQKHLLRAKAKEMGPVKNKMSKL 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04897 568 Gene3D - 453 560 IPR045851 -
Trre15g04897 568 FunFam Long-chain-fatty-acid--CoA ligase FadD 7 452 - -
Trre15g04897 568 Pfam AMP-binding enzyme 26 457 IPR000873 -
Trre15g04897 568 FunFam 2,3-dihydroxybenzoate-AMP ligase 452 559 - -
Trre15g04897 568 Pfam AMP-binding enzyme C-terminal domain 466 545 IPR025110 -
Trre15g04897 568 PANTHER ACYL-ACTIVATING ENZYME 11 564 - -
Trre15g04897 568 CDD ttLC_FACS_AEE21_like 17 553 - -
Trre15g04897 568 SUPERFAMILY Acetyl-CoA synthetase-like 13 557 - -
Trre15g04897 568 Gene3D - 5 452 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04897 Trre-Chr15 59091489 59094850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04897 6 561 Miscellaneous Gene Families AT3G16910 74.865 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04897 K01913 - gmx:100808187 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04897 15 59091489 59094850 Trre15g04897 15 59091489 59094850 ECH