Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04893 ATGACCATCGACTTAGATTCAATCACTCGCAGAGTCGATGTTGATAATCGCATTCCTCTCCGTTACTACTATCGGATTGCCGATAATCTCCTCAAGCAGGCAAGTGTCTACAGGGAGGAGAATAATATAGTTGATCTGTACATCATACTCCTTAGATTTATAAGTTTGGTTTCCGAGACGATACCATATCACCGAGATTACCAAGCTTCACTTCCTAATGAAAGAACAGCATATAAGAGGAGATCACTACTTGTATTGGATGAGCTTGAGTCATTGAAGCCTGAATTTAAACGCCGGTTGGAAAAATTGAATGAATCACGTGTACAAGCTCCATTGCTTGAAGAAAATGGTTTCAATATGGCTATGCAGAGTCCAGCAAATTCAAGTTTGGAATGGCCAGCTGTCAATAAAAGATATAACTCAAGCATGGATTTCAAACAGTCTGCTGGATTTGGCTCACAATCTTCATCGAAACCTAATAGCACGTTATCTTCAATTTCCATGCCTATTGATAAGCAGTTTCAGAAATTATCTATGAATCTGCCACTACCAAATAAGGAGACCTTGTCAAGACACTCATTTTTAGGACCAAATGGTCTTCGGGGACAATGGCTCGGACCTAGTGCAGAAATTAAGGTTCAATATCCAAGCAGTAATGATCTTACGCATGCCAAGGATTCGAGCGCTGTAAAGTATGACATTGTTGGCATTAAAGACGGTGACCAAGCCCCGGTTACATCCACAATGGATTCAATTCTTTCCTTGGATGATGGTAGATGGTCGCATCCTACTGTTGAGTCCTGTTCTCCTGTTGTAACTGAATCAAGGGAGGACTTCTTACAGTCGCTCAACATCAAGCAACCTTTGCCTCCTCCTGTTCTTGCTCAGGTTCACCCAGAACGTGCCTCTATTCCTCCTTCAAAAGTTGCAGATCCAAGGCCAGGACCGGCGAAATCTTCTCATGATTCTGGACATGGTCCCACTACATATCAACACCTACACATTCCTGTAAAAATGATGGAAGATTTTCTCAGATTGGCTTCAGCAAACACGCGAAAGAATTTAGAGACTTGTGGTGTTCTTGCAGGGTCTCTGAAAAACAGGGTTTTTCAGATCACAACACTTATAATCCCAAAGCAGGAATCGACTTCTGACTCGTGTGAAACATTGGATGAAGGAGAAATATTTGAAGTTCAAGACCGCTTGTCACTTTTTCCCCTAGGTTGGATACATACACACCCGTCTCAGACGTGTTTCATGTCATCTGTGGATCTGCATACACATTACTCATATCAGATCATGTTACCGGAGGCAATTGCAATAGTCATGGCTCCTACAGATAAAGAAAGTCCACATGGCATATTTCATCTGTCTGATCCCGGTGGTGTTTCGGTAATTCGTAACTGTCAACAACGTGGATTTCATCCCCATGAAGAGCCTTCAGATGGAAGTCCAATATATGAGCACTGCTCTCATGTCTATATGAATGCCAACATGAAATTTGATGTTATTGATCTTCGAGAGAAATGA 1530 0.419 MTIDLDSITRRVDVDNRIPLRYYYRIADNLLKQASVYREENNIVDLYIILLRFISLVSETIPYHRDYQASLPNERTAYKRRSLLVLDELESLKPEFKRRLEKLNESRVQAPLLEENGFNMAMQSPANSSLEWPAVNKRYNSSMDFKQSAGFGSQSSSKPNSTLSSISMPIDKQFQKLSMNLPLPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSNDLTHAKDSSAVKYDIVGIKDGDQAPVTSTMDSILSLDDGRWSHPTVESCSPVVTESREDFLQSLNIKQPLPPPVLAQVHPERASIPPSKVADPRPGPAKSSHDSGHGPTTYQHLHIPVKMMEDFLRLASANTRKNLETCGVLAGSLKNRVFQITTLIIPKQESTSDSCETLDEGEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDKESPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSDGSPIYEHCSHVYMNANMKFDVIDLREK 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04893 509 Gene3D - 2 121 - -
Trre15g04893 509 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 329 436 IPR000555 GO:0005515|GO:0008233|GO:0008237
Trre15g04893 509 SMART pad1_6 332 460 IPR000555 GO:0005515|GO:0008233|GO:0008237
Trre15g04893 509 Pfam USP8 dimerisation domain 4 100 IPR015063 -
Trre15g04893 509 SUPERFAMILY JAB1/MPN domain 332 463 - -
Trre15g04893 509 Gene3D Cytidine Deaminase, domain 2 317 509 - -
Trre15g04893 509 ProSiteProfiles MPN domain profile. 333 463 IPR037518 -
Trre15g04893 509 Coils Coil 86 106 - -
Trre15g04893 509 MobiDBLite consensus disorder prediction 303 330 - -
Trre15g04893 509 SUPERFAMILY USP8 N-terminal domain-like 4 107 - -
Trre15g04893 509 PANTHER AMSH-LIKE PROTEASE 3 507 - -
Trre15g04893 509 FunFam AMSH-like ubiquitin thioesterase 3 318 509 - -
Trre15g04893 509 CDD MPN_AMSH_like 330 507 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04893 Trre-Chr15 59054242 59061626 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04893 K11866 - gmx:100812784 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04893 15 59054242 59061626 Trre15g04893 15 59054242 59061626 ECH