Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04389 ATGGTTACTGGAGCGGTACAAGTAGAAATGAATTCTGTAAGTGTTCCTAAGCAAGCTTATGAAGTTGGCGAGAGCTCGGTTTCCGATACTACTAGTGATGAAGTTGCAGAGGCCAAGGCACAGCCTAATGCCAAAAGGGTCAGGCTGCAGAAGGAACTAACGTTCCAGGACTTGTATGAAAACCAAGAGTTGTTTGACGAGGAAGATGATGACGAGGACGGTGATTGGGATCCGTCCCAGTTGCAGATGTGTGTTGAAGTCATCAAGTGGTTCTGTAAAAATTGTACCGTGGATAACATAAACAATGATGTTTGTTGCCGAATATGTGGGGAGCATAAAGATTCTAAAATCCTGAGCCTTGGGCATTTTGCCTCTCCCTTTGCACAAGATGAAGATCTGAATGGGATCCACCCAAGTATAAAAGGACTGAGAGATCTTGACTCACGGGAATCAGCAGCAAACAATTCTACGGCAATTGGCTTTGATGAAAGAATGTTGTTACATGCAGAAGTTGAAATGAAACCGCATCCACACCCTGAAAGGCCAGATCGACTTCGAGCAATTGCTGCTAGTCTTGCCAAAGCTGGTATATTTCCAGGAAGATGCTATCCAATTCCTGCTAGAGAAATCACTCAAGAAGAACTTATGATGGTTCATTCTTCGGAGCATATCGAATCTGTGGAAGTTACAAGCAAGTTAATGTCTAGTTACTTCACTTCTGACACATACGCCAATGAGCATTCAGCATGTGCTGCTAGGTTGGCAGCTGGGTTATGTGCTGATCTGGCATCGGCAATTGTTTCTGGGCGTGCCAAAAATGGTTTTGCTTTGGTTAGACCTCCTGGTCATCATGCTGGTGTAAAAGATGTGATGGGGTTTTGCCTTCACAATAATGCTGCAGTGGCAGCATTGGCGGCTCAGGCTGCAGGGGCTAGGAAGGTGCTCATTTTAGATTGGGATGTTCATCATGGAAATGGCACACAGGAAATATTTGAGCAAAACAATTCAGTCTTGTATATATCATTGCATAGGCATGAGGGTGGAACGTTTTATCCCGGTACCGGAGGTGCTCATGAGGTTGGTTATATGGGTGCAGAAGGTTTCTGTGTGAATATTCCATGGAGTCGAGGTGGTGTTGGTGATAATGATTACATTTTTGCATTTCAGCATGTTGTACTTCCTATAGCTTCCGAATTTGCTCCAGATTTTACCATAATATCAGCAGGATTTGATGCTGCTAGAGGTGATCCCCTAGGTGGCTGTGATATTACTCCTTTTGGCTATGCACATATGACACACATGTTGAATGCCCTTTCTGGTGGAAAAATGCTTGTTATTCTTGAGGGGGGCTATAATCTTCGTTCTATATCATCTTCTGCAACTGCAGTAATCAAGGTATTACTGGGTGATAGTCATGTTGGTGATAGTCGTGTATGTGAACTGGAAAACAGTTTCCCTTCCAAATCTGGCCTGCAAACTGTTTTCGAAGTCCTCAACATTCAGAATAATTTTTGGCCTTCCTTGAAACCTATCTTTATGAATGTGATGTCACTTTGGAAAATGCACTGTCTTGGGAAAAAAAGCAAACCCACAAAAAAGAGACGCCGAATTGTACCACCAACGTGGTGGAGATGGGGTCGCAGAAGTTTCTTATTCCATACGCTGAACGGCCATCTTCGTGTAAAACCAAAACGACTTCGTTGA 1704 0.4354 MVTGAVQVEMNSVSVPKQAYEVGESSVSDTTSDEVAEAKAQPNAKRVRLQKELTFQDLYENQELFDEEDDDEDGDWDPSQLQMCVEVIKWFCKNCTVDNINNDVCCRICGEHKDSKILSLGHFASPFAQDEDLNGIHPSIKGLRDLDSRESAANNSTAIGFDERMLLHAEVEMKPHPHPERPDRLRAIAASLAKAGIFPGRCYPIPAREITQEELMMVHSSEHIESVEVTSKLMSSYFTSDTYANEHSACAARLAAGLCADLASAIVSGRAKNGFALVRPPGHHAGVKDVMGFCLHNNAAVAALAAQAAGARKVLILDWDVHHGNGTQEIFEQNNSVLYISLHRHEGGTFYPGTGGAHEVGYMGAEGFCVNIPWSRGGVGDNDYIFAFQHVVLPIASEFAPDFTIISAGFDAARGDPLGGCDITPFGYAHMTHMLNALSGGKMLVILEGGYNLRSISSSATAVIKVLLGDSHVGDSRVCELENSFPSKSGLQTVFEVLNIQNNFWPSLKPIFMNVMSLWKMHCLGKKSKPTKKRRRIVPPTWWRWGRRSFLFHTLNGHLRVKPKRLR 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04389 567 PANTHER HISTONE DEACETYLASE 9-RELATED 67 510 IPR017320 GO:0000118|GO:0004407|GO:0006325|GO:0016575
Trre15g04389 567 ProSitePatterns Zinc finger RanBP2-type signature. 90 109 IPR001876 -
Trre15g04389 567 FunFam Histone deacetylase 15 150 522 - -
Trre15g04389 567 PRINTS Histone deacetylase superfamily signature 280 303 IPR000286 -
Trre15g04389 567 PRINTS Histone deacetylase superfamily signature 313 328 IPR000286 -
Trre15g04389 567 PRINTS Histone deacetylase superfamily signature 401 411 IPR000286 -
Trre15g04389 567 MobiDBLite consensus disorder prediction 20 37 - -
Trre15g04389 567 Gene3D Histone deacetylase domain 154 511 IPR037138 -
Trre15g04389 567 MobiDBLite consensus disorder prediction 20 39 - -
Trre15g04389 567 Pfam Histone deacetylase domain 178 466 IPR023801 -
Trre15g04389 567 SUPERFAMILY Arginase/deacetylase 154 508 IPR023696 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04389 Trre-Chr15 54538464 54545653 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04389 - - mtr:25493939 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04389 15 54538464 54545653 Trre15g04389 15 54538464 54545653 ECH