Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04384 ATGGATGAAAACTTCGATGGCTTCAATAACAAACTCCCCGAACTCAAATTAGATTCTAAGCAAGCACAAGGGTTTCTGTCATTTTTCAAAACCCTACCTGATGACCCGAGGGCCATTAGGTTTTTTGATCGTCGGGATTACTATACTGCCCATGGGGAGAATGCAACGTTCGTTGCCAAAACATACTATCACACTACTACTGCTTTGCGACAGTTGGGTAGTGGATCAAATGCTCTTTCCAGTGTGAGCGTCAGTCGGAACATGTTTGAAACAGTTGCTCGTGATCTTCTTTTGGAGAGAACAGACCATACACTTGAGGTCTATGAGGGCAGCGGCTCTAACTGGAGACTGGTCAAAAGTGGCACACCTGGTAATATTGGCAGTTTTGAAGATGTTCTGTTTGCTAACAGTGAGATGCAAGATTCTCCAGTTGTCGTTGCACTGTCACTCAACTTCCGTGAAAGTGGGTGCACCATTGGATTAGGATTTGTTGATCTAACTAAGAGACTACTTGGGATGGCTGAATTCCTTGATGACAGTCACTTCACAAACGTGGAGTCAGCATTGGTTGCTCTTGGTTGCAAAGAGTGCCTTGTGCCTATTGAGCGTGGAAAATCTATTGAATATAAAATGTTGTGTGATGTGTTGACTAAATGTGGCGTGATGCTAACTGAGAGAAAGAAATCCGAGTTTAAGACTAGAGATCTGGTACAAGATCTTGGCAGGCTTGTCAAAGGTTCTATTGAAGCAGTTCAAGATTTAGTGTCTGGGTTTGAATTTGCACCAGGTGCTTTGGGGGCACTGCTATCTTATGCAGATTTACTTGCAGACGAAAGCAATTATGAAAATTATACTTTGCGTAGGTACAATCTTGACAGTTACATGAGGTTAGATTCTGCAGCCATGAGGGCACTTAATGTCTTAGAAAGCAAAACTGATGCAAACAAAAATTTCAGTTTGTTTGGTCTCATGAATAGGACATGTACAGCTGGAATGGGAAAACGGTTATTGCACATGTGGCTAAAGCAGCCATTAGTAGATGTAACTGAAATTAACTCCAGGTTGGATGTAGTACAAGCATTTGTAGAGGACACTGTGCTTCGCCAAGATCTGAGGCAGCATCTGAAAAGAATATCAGACATTGAGCGACTGGTGCACAATCTTCAGAAGCGAAGAGCTGGTCTGCAACATGTTGTTAAACTTTATCAGTCAAGTATAAGACTGCCTTACATTAAAAGTGCTCTGGACAGGTATGATGGACAGTTTTCTTCAATGATGAAGAGCAGGTATTTGAAAGATTTGGAGTTATGGACTGGTGCTGATCGCCTAAATAAATTTATTGAGCTAGTAGAAACTGCTGTTGACCTTGATCATCTGGAGAATGGGGAATACATGATTTCTTCAAGTTATGACTCTGCACTAGCTGAACTTAAGGAGCAGCAAGAATTACTAGATAGCCAAATACATGACTTGCACAGACAAACTGCTGTTGATCTTGATCTGGCCGTAGATAAGGCATTAAAGTTAGATAAGGGCACACAATTTGGACATGTTTTTAGGATCACAAAGAAGGAGGAGCCAAAAATAAGGAAGAAGCTCAACAGCCAGTTTATTGTACTGGAAACCCGTAAAGATGGAGTGAAGTTTACCAACACAAAGCTCAAAAAATTGGGGGACAAATATCAACAAATTCTTGAGGAGTACAAGAGCTGTCAAAAACAGTTGGTTATTAAAGTAGTTGAAATTTCAGCAACTTTTTCTGAGGTGTTTGAATCTTTAGCTGAATTAATTTCAGAATTGGACGTGTTACTAAGCTTTGCTGATTTGGCTTCTAGTTGTCCTACTCCATATACAAGGCCCGACATCACCTCTTCGGACGAAGGAGATATTATTTTAGAAGGTAGCAGACACCCCTGTGTGGAGGCACAAGATTGGGTGAATTTTATACCAAATGACTGTAAGCTTATCAGAGGAAAAAGTTGGTTTCAAATAATAACAGGACCTAACATGGGTGGGAAATCAACATTCATCCGGCAGGTGGGCGTGAATATTTTGATGGCGCAAGTTGGTTGCTTTGTTCCATGTGACAAAGCCAGCATATCTGTTCGTGATTGCATTTTTGCTCGTGTTGGTGCAGGTGACTGCCAACTTCGTGGAGTTTCTACCTTTATGCAAGAAATGCTCGAAACTGCATCAATATTAAAAGGAGCTACTGACAAGTCCTTGATAATCATCGATGAGTTGGGGCGTGGGACATCAACTTACGATGGATTTGGTCTAGCTTGGGCCATTTGTGAGCACATAGTTGACGTGATAAAAGCACCTACTTTATTTGCAACTCACTTTCATGAACTGACTGCATTAGCCCATGAAAATGATCCGCATAAACAAATTGTTGGTGTGGCCAATTACCATGTTAGTGCACATATTGATGCATCTACGCGCAAGCTAACTATGCTATACAAGGTTGAAGCAGGAGCTTGTGATCAGAGTTTTGGTATTCATGTTGCTGAGTTTGCAAACTTCCCTGAAAGTGTTGTCGCCCTAGCTAGAGAAAAGGCAGCAGAATTGGAAGATTTTTCTTCTTCTGCAATTTCCTTAATTGATTCTTCTACAGAAGAGGTGGGTTCTAAGCGTAAGAGAGCATTTGAACCTGATGAGATTTCTAAAGGGGCAGCAAAAGCTCGCCAAATTCTTGAAGCGTTTGTTGCTCTGCCACTAGACACCATGGACAAAACGCAAGCTTTGGAAGAAGTTAAGAAGTTGAAAGATAATTTAGAGAAGGATGCACAAAACTGTCACTGGTTGCAAAAATTCTTGTAG 2823 0.4123 MDENFDGFNNKLPELKLDSKQAQGFLSFFKTLPDDPRAIRFFDRRDYYTAHGENATFVAKTYYHTTTALRQLGSGSNALSSVSVSRNMFETVARDLLLERTDHTLEVYEGSGSNWRLVKSGTPGNIGSFEDVLFANSEMQDSPVVVALSLNFRESGCTIGLGFVDLTKRLLGMAEFLDDSHFTNVESALVALGCKECLVPIERGKSIEYKMLCDVLTKCGVMLTERKKSEFKTRDLVQDLGRLVKGSIEAVQDLVSGFEFAPGALGALLSYADLLADESNYENYTLRRYNLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDVTEINSRLDVVQAFVEDTVLRQDLRQHLKRISDIERLVHNLQKRRAGLQHVVKLYQSSIRLPYIKSALDRYDGQFSSMMKSRYLKDLELWTGADRLNKFIELVETAVDLDHLENGEYMISSSYDSALAELKEQQELLDSQIHDLHRQTAVDLDLAVDKALKLDKGTQFGHVFRITKKEEPKIRKKLNSQFIVLETRKDGVKFTNTKLKKLGDKYQQILEEYKSCQKQLVIKVVEISATFSEVFESLAELISELDVLLSFADLASSCPTPYTRPDITSSDEGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVDVIKAPTLFATHFHELTALAHENDPHKQIVGVANYHVSAHIDASTRKLTMLYKVEAGACDQSFGIHVAEFANFPESVVALAREKAAELEDFSSSAISLIDSSTEEVGSKRKRAFEPDEISKGAAKARQILEAFVALPLDTMDKTQALEEVKKLKDNLEKDAQNCHWLQKFL 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04384 940 Gene3D DNA repair protein MutS, domain I 9 122 IPR016151 GO:0005524|GO:0006298|GO:0030983
Trre15g04384 940 PIRSF MSH2 8 940 IPR011184 GO:0005524|GO:0006298|GO:0030983
Trre15g04384 940 Gene3D - 295 522 - -
Trre15g04384 940 Gene3D - 523 617 - -
Trre15g04384 940 Gene3D MutS, connector domain 123 292 IPR036678 GO:0005524|GO:0006298|GO:0030983
Trre15g04384 940 Coils Coil 474 494 - -
Trre15g04384 940 CDD ABC_MSH2_euk 631 858 IPR032642 GO:0005524
Trre15g04384 940 FunFam DNA mismatch repair protein 123 292 - -
Trre15g04384 940 Pfam MutS family domain IV 470 567 IPR007861 GO:0005524|GO:0006298|GO:0030983
Trre15g04384 940 Pfam MutS domain III 301 607 IPR007696 GO:0005524|GO:0006298|GO:0030983
Trre15g04384 940 Coils Coil 909 932 - -
Trre15g04384 940 SUPERFAMILY DNA repair protein MutS, domain III 298 612 IPR036187 -
Trre15g04384 940 FunFam DNA mismatch repair protein 8 122 - -
Trre15g04384 940 Pfam MutS domain V 663 858 IPR000432 GO:0005524|GO:0006298|GO:0030983
Trre15g04384 940 SMART DNAend 315 643 IPR007696 GO:0005524|GO:0006298|GO:0030983
Trre15g04384 940 Coils Coil 371 391 - -
Trre15g04384 940 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 859 IPR027417 -
Trre15g04384 940 FunFam DNA mismatch repair protein MSH2 618 936 - -
Trre15g04384 940 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 66 862 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Trre15g04384 940 FunFam DNA mismatch repair protein MSH2 514 617 - -
Trre15g04384 940 Pfam MutS domain I 24 129 IPR007695 GO:0005524|GO:0006298|GO:0030983
Trre15g04384 940 Pfam MutS domain II 144 284 IPR007860 GO:0005524|GO:0006298|GO:0030983
Trre15g04384 940 Gene3D - 618 937 IPR027417 -
Trre15g04384 940 ProSitePatterns DNA mismatch repair proteins mutS family signature. 741 757 IPR000432 GO:0005524|GO:0006298|GO:0030983
Trre15g04384 940 Coils Coil 554 574 - -
Trre15g04384 940 SMART mutATP5 660 855 IPR000432 GO:0005524|GO:0006298|GO:0030983
Trre15g04384 940 FunFam DNA mismatch repair protein 295 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04384 Trre-Chr15 54482337 54497178 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04384 K08735 - gmx:100792272 1654.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04384 15 54482337 54497178 Trre15g04384 15 54482337 54497178 ECH