Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04371 ATGGACTGGGGTGTTAATAATAATAATCACTTCAGAACTTACAAAGAAGAACATAATAAATCAATGATGGATTTGGAACTGATTTCAAACATGGATCCTGTAAATATTGGACTTGGTTGTTCAGAAAAGACAATTCCTGTTACTTCTTCTTCAATCAAGCCAAGAAAGAAAACAATGACTTCAGTTTATTTGAAGTTTTTTGAGACTGCTACTGATGGAAAGACTAGGAGATGCAAGTTTTGTGGACAAAGCTATTCCATTGCAACCGCCACAGGCAATTTGGGGAGGCATCTTGCTAATCGCCATCCAGGCTACGATAAGACTGGGGAAGCTGTAAGCACTTCGGTAACTAGGCCCAATGTTGTGATCAAGAAATGTCAGGCTCAAGGAAAATCAAACCAGGTGGATTATGATCATCTAAATTGGTTACTCGTTAGGTGGCTTGTTTTAGCTTCTCTCCCTCCTTCAACTCTAGAAGAAAAGTGGCTTGTGAATTCTTACAAGTTTCTAAACCCATCGATACAAATTTGGCCTAGTGACAAGTACAGAACTGTACTTGATGAAGTTTTCAGAAGCATGAGGGAAGATGTAAAAGCATTGTTAGAACAGGTTTCTTTCAAGTTCTCCATCACACTTGATTTTTGGACTTCCTTTGAACAGAACTTCTATATGAGTGTAACATGTCAGTGGATTGATGAAAACTGGTGCTTCCAGAAGTTGCTTCTTGACATCTGTCGTGTACCCTATCCATGTGGGGGTGCAGAAATCTATCGTTGCCTCGTAAAAGTTCTTAAATTTTACAATATTGAAAGCAGAATCCTGTCATGTACCCACGATAATAGTTCAAGTGCCATGCATGCTTGCCATACTTTGAAAGAGGATTTGGATGGCCATAAAATAGGACCATTCTGTTATATACCTTGCGCTGCTCAAACTTTGAACCTGATAATAGATGATGGATTGAGATCTGGAAAACAAGTAATTTCAAAGATCAGAGAATTTGCAATGGAGTTAAATGCATCACCGGTAATCTCTGAGGATTTTATTCAAATCTCTACTGCTTATCAAGAAGGTACATGGAAATTTCCTCTTGATGTTTCAGCAAGATGGAGTGGAAACTACCAAATGCTTGATCTTGTTCGCAAGGCTGGTAAATCAGTGGATGCGATTATTCGTAAATATGAAGAGACACTAGGCAGTAGGATAATGCTGAGTCCTTCTGATAAAAGTGTGGTTAACATCATGCATCAATATCTCGAGCCATTCTACAAGACCACAAACGACATATGCACGAGCAAGGTGCCAACAATCGGGCTAGTCCTTTTCTTCATGGATCACATCTCAGAAACAATCGCTACCTGCAAAGAATCACGTCCCAGTCCAGAATGGCTAAAAAATGCTGCAGAAGAAATGGCTAAAAAGGCTAGAAATTATACTAATCAGGTTTGCAACATATTTACATATATGACAGCTATTCTAGATCCTCGAATAAAGGGAGATTTGATCCCGGATAGTTTAAACTCGCAAAGTTATCTGGACGAAGCAAGGACGCATTTTATAAGAAACTATTCTATTAACCATTTCTCCTCCCTGAGTTCTGGTTACAATGCACAAGAAATTGAAGATGGAGGAAATGTTTCCTTTGCCGAGGAAATAGCTCGCAAGAAGCGTAGGACAAACATGAGCTCTGCAACTGATGAGCTTACACAGTATTTGTCAGAGGCTCCAGCTCCAATAGCAACTGATGTTCTAGAATGGTGGAAGGTAAACAGTACACGCTACCCTCGACTGTCTGTGATGGCTAGAGATTTCTTGGCTGTACAGGCAACTTCAGTAGTGCCTGAAGAACTTTTCTGTAGCAAGGGTGATGAAATTGACAAGCAACGATTTTGTATGCAGAATGATAGCACACAAGCTGTTCTTTGTATCAAGTCATGGATTCAGGTTGGAATCAAGTTTAAGTATAAATCGATGGAGATAGATTATGAGAGGTTAATGGAACTAGCAGCTGCTTCTGCAACACATAATAATAATAGCCCTTCAAGTTCTGAGAAGAAGCAAAAATAG 2067 0.3943 MDWGVNNNNHFRTYKEEHNKSMMDLELISNMDPVNIGLGCSEKTIPVTSSSIKPRKKTMTSVYLKFFETATDGKTRRCKFCGQSYSIATATGNLGRHLANRHPGYDKTGEAVSTSVTRPNVVIKKCQAQGKSNQVDYDHLNWLLVRWLVLASLPPSTLEEKWLVNSYKFLNPSIQIWPSDKYRTVLDEVFRSMREDVKALLEQVSFKFSITLDFWTSFEQNFYMSVTCQWIDENWCFQKLLLDICRVPYPCGGAEIYRCLVKVLKFYNIESRILSCTHDNSSSAMHACHTLKEDLDGHKIGPFCYIPCAAQTLNLIIDDGLRSGKQVISKIREFAMELNASPVISEDFIQISTAYQEGTWKFPLDVSARWSGNYQMLDLVRKAGKSVDAIIRKYEETLGSRIMLSPSDKSVVNIMHQYLEPFYKTTNDICTSKVPTIGLVLFFMDHISETIATCKESRPSPEWLKNAAEEMAKKARNYTNQVCNIFTYMTAILDPRIKGDLIPDSLNSQSYLDEARTHFIRNYSINHFSSLSSGYNAQEIEDGGNVSFAEEIARKKRRTNMSSATDELTQYLSEAPAPIATDVLEWWKVNSTRYPRLSVMARDFLAVQATSVVPEELFCSKGDEIDKQRFCMQNDSTQAVLCIKSWIQVGIKFKYKSMEIDYERLMELAAASATHNNNSPSSSEKKQK 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04371 688 Pfam BED zinc finger 62 103 IPR003656 GO:0003677
Trre15g04371 688 SMART bed5 58 105 - -
Trre15g04371 688 Pfam Domain of unknown function (DUF4413) 430 510 IPR025525 GO:0003677
Trre15g04371 688 Pfam hAT family C-terminal dimerisation region 567 647 IPR008906 GO:0046983
Trre15g04371 688 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 42 642 - -
Trre15g04371 688 SUPERFAMILY Ribonuclease H-like 194 649 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04371 Trre-Chr15 54311091 54314408 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04371 - - ahf:112708868 1098.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04371 15 54311091 54314408 Trre15g04371 15 54311091 54314408 ECH