LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g04360	ATGGATTCGGACGAAGAAGATTTAGTTTTCTTCGGAACGCCGATTGAGCGCGAGGAAGATTCAATCAGCCGCAAAAAGAAAGCCATTGCTGAATCCTCCGGTCAACTCCGAACACTCCCTGCTTGGAAGCAAGAGGTTAGAGATGATGAAGGAAGGAGAAGATTTCACGGCGCGTTTACAGGAGGTTATTCAGCTGGTTACTATAATACAGTGGGTTCAAAGGAAGGGTGGGCACCGCAAACTTTTGTATCGTCCAGGAAGAGCAGAGCTGAATTCAAAGAGCAGAACATATTAAATTTTCTAGACGACGATGAGAAAGCTGATCTGGAAGGTCAGTTTTTGGGGACATCTTCACAGTTTGACACATTTGGTTCCACAGCTGCTGAAATTGCTCGCAAACAAGCTGAGAAGGAACAAAAACAGAGGCCATCCATAATTCCTGGACCTGCTCCCGACGAATTAGTTATTCCAGCCACAGAGTCTGTAGGGGTAAAATTGCTGTTGAAGATGGGATGGAGTCGTGGTCGCTCAATTAAGGATTCACATACTGATGCACTCTACGATGCTAGAAGACAGGCTCGGAGAGCTTTCATAGCATTTTCTTCAGATGATACAAAAGTGAAGGTTACCGAGTCTGAGCATACCAAGGATGATATTCAAAACTTCCCTGAGCAGCTTGTGAATGATGATGCTCAGACTTCTAAGATCACACCGGTTTACGTACTCAACCCAAAGCAAGACCTGTATGGATTAGGTTTTGATCCTTATAAGCATGCTCCCGAGTTTAGAGACATGAAAAGGTCACGCCTATCCAGCAAAACGGGACCTGGGCACAGCAAAAACGTTTCCACAAGAGACAGTCTTTTTGGTTTGAAGTCAGGAAAGATTGCTCCTGGTTTTGGCATTGGTGCACTTGAGGAACTTGATGCTGAAGATGAGGATGTCTATGCCACTGGTTATGAATTTGAAGAAGCTTATGTTCAAGAAGAGGTTGAGGAGCCTTCAGTGTTGACCCTAGAAAATCCAAAAAAGAAAAATCAGAAGGAGCATGGTAATCTGCCTGGTTTTAGAGTGACATCCAATTCTGACTATAAAATGGAAAGATTTGAGGCTCCTCTGATTCCCAAGGATTTTGTGCCCCACCATGCATTTTCTGGACCTCGTGAGATTAACCGCCAGAACTATGAGGTCCCTCCACCAGACGTTCCTCCTCCTGAGGATAGCAATTTAAAACTATTAATTGAGGGGGTCGCAAATCTTGTAGCTAAATGTGGTAAATTATATGAGGATCTATCTAGAGAAAAAAACCGGTCAAATCAGTTGTTTAACTTCCTTTCTGGAGGAACCGGCCACGACTATTATGCAAGGAAACTGTGGGAGGCACAACAGAAATGCAATGATCAAACTAGGGTGCAGTTGGATGGAAAAATACCTCCTGGTGTGCAAAGGCTGACAGCTGAGAGTCGAGGTCGGATCTTAGGGGAAAAACCTCTAGAGAAAACCTTTGAAGATCCATCCTCATCTGTTTCTTCTAAAGATATTCAGCTCCAATATAATCTTGTAGATACATTTACCAAGTCTGCGTCATTTAGTGAGTTATCAGAATTTGAAAAGCCTTTCAAGGATGATCCTGCAAAGCAAGAAAGGTTTGAGCAGTTTATCAAGGAGAAGTATAGAGGTGGATTACGCTCTGGAAGTTCGAGTTTAGCTGGAAATATGTCAGAAGCTGCTCGTGCTCAAGAGAGACTATCTTTTGAAGCTGCAGCTGATGCACTAGAAAAGCGAAAACAGAGCAGGGGAAGCAAGCTTCCATCTTCCATGGATTTCATCCCAGGTGGTGTAATGGAGTTTACATCTGGTGCAGTTGAGCCGACAAAAGACCAGCCAGTTGTAGACTTTAAGAAGAAATTGTACCCAAAGAGAGAAGAGTTTCAATGGCGTCCTTCATCTCTTCTCTGCAAACGCTTCGATCTTGTTGATCCTTATATGGGGAAGCCTGCACCTGCTCCACGGATTAGGAGTAAGATGGATACATTGATTTTTACTTCAGATTCAGTGAAGGGTACTAAAGTGGAAGAGCCTGTGACTGCAAAGAAAGACATCCCAGTTTTGCAACAATCTGCTAATAAAGACATAGTTAAAAGTATCACTGAAAGTGAAACTCAAGAGGAAGTGGAAGTTGAAAATATTGAAAGGCCGGTTGACCTGTACAAGGCTATTTTCTCTGATGATTCAGATGATGAAGTGGAAGACAATAATATTATGAAAGTGGAGAATCAAGAAAAAAAAGCTGAAGTAGCTAACACAGCATTGAGCCGTTTGATTGCTGGTGACTTTCTGGAATCTTTGGGAAAGGAACTAGGAATTGAGGTTCCTCCTGATACACCTTACCCTACACAAAAGTCTGGCAAAGATGCTCCCCTGAGAGAAAATGTTAATGAATATGCAAAACCTGACATCATGAATGGTGAAAACAACGTGGTGTCATCGAAACATGATTTGCCACGGGATCAGTACATTGCTCATGAGGGTGGGCCCTCAAAAGATGAAACCAGTTATGGACATATGCTTGATAATCGTAACATCAAAACCAAGGGAACTAGTATCTCTGATGGTAAGTCAAAATCAAGTATGTCTAATGGAGAGAAGTATGAAGATGATAGGAATGTTAAATCACCTTTTGTCAGCAACCATGACCATCGCAGCAGTTCAGAGGAGGAAAGGAGCAGAAAGCGCTCTAGTAAGTTAAATAGGGAAAAATATGACGGGTACAAGAAAACTAAAACACCATCAACACACCGCCTAGATTATAGAAGTAGTTCTTCATCGGAAGAGGATAGGAGCAGGAAACGCTCCAGGCATCATCTACATAGGAGGCGTGATGTAGGAAGTGATTCATCCAGTGACAATGAAAGAGATCGACGCAGTTCAAGGTCTAAAGGGAGACGGGAAAAGTCTTCTCGAGAAAAAAGCAATGGAAGTAAGAAACACTCAAAACATCACAAGCACGGAAAGCATGAATCTCCAAGTAGATCCTCTCATTATAAGATGGATAAGGACGATTCATATTCCAGAAAAGAGAAAAGACGGAGGGAATGA	3099	0.4259	MDSDEEDLVFFGTPIEREEDSISRKKKAIAESSGQLRTLPAWKQEVRDDEGRRRFHGAFTGGYSAGYYNTVGSKEGWAPQTFVSSRKSRAEFKEQNILNFLDDDEKADLEGQFLGTSSQFDTFGSTAAEIARKQAEKEQKQRPSIIPGPAPDELVIPATESVGVKLLLKMGWSRGRSIKDSHTDALYDARRQARRAFIAFSSDDTKVKVTESEHTKDDIQNFPEQLVNDDAQTSKITPVYVLNPKQDLYGLGFDPYKHAPEFRDMKRSRLSSKTGPGHSKNVSTRDSLFGLKSGKIAPGFGIGALEELDAEDEDVYATGYEFEEAYVQEEVEEPSVLTLENPKKKNQKEHGNLPGFRVTSNSDYKMERFEAPLIPKDFVPHHAFSGPREINRQNYEVPPPDVPPPEDSNLKLLIEGVANLVAKCGKLYEDLSREKNRSNQLFNFLSGGTGHDYYARKLWEAQQKCNDQTRVQLDGKIPPGVQRLTAESRGRILGEKPLEKTFEDPSSSVSSKDIQLQYNLVDTFTKSASFSELSEFEKPFKDDPAKQERFEQFIKEKYRGGLRSGSSSLAGNMSEAARAQERLSFEAAADALEKRKQSRGSKLPSSMDFIPGGVMEFTSGAVEPTKDQPVVDFKKKLYPKREEFQWRPSSLLCKRFDLVDPYMGKPAPAPRIRSKMDTLIFTSDSVKGTKVEEPVTAKKDIPVLQQSANKDIVKSITESETQEEVEVENIERPVDLYKAIFSDDSDDEVEDNNIMKVENQEKKAEVANTALSRLIAGDFLESLGKELGIEVPPDTPYPTQKSGKDAPLRENVNEYAKPDIMNGENNVVSSKHDLPRDQYIAHEGGPSKDETSYGHMLDNRNIKTKGTSISDGKSKSSMSNGEKYEDDRNVKSPFVSNHDHRSSSEEERSRKRSSKLNREKYDGYKKTKTPSTHRLDYRSSSSSEEDRSRKRSRHHLHRRRDVGSDSSSDNERDRRSSRSKGRREKSSREKSNGSKKHSKHHKHGKHESPSRSSHYKMDKDDSYSRKEKRRRE	1032

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g04360	1032	SUPERFAMILY	Surp module (SWAP domain)	395	463	IPR035967	GO:0003723\|GO:0006396
	Trre15g04360	1032	Pfam	Surp module	413	460	IPR000061	GO:0003723\|GO:0006396
	Trre15g04360	1032	Gene3D	Surp module	369	467	IPR035967	GO:0003723\|GO:0006396
	Trre15g04360	1032	MobiDBLite	consensus disorder prediction	789	1032	-	-
	Trre15g04360	1032	MobiDBLite	consensus disorder prediction	959	991	-	-
	Trre15g04360	1032	ProSiteProfiles	SURP motif repeat profile.	413	457	IPR000061	GO:0003723\|GO:0006396
	Trre15g04360	1032	MobiDBLite	consensus disorder prediction	1010	1032	-	-
	Trre15g04360	1032	Pfam	Protein of unknown function (DUF1604)	39	117	IPR011666	GO:0006397
	Trre15g04360	1032	SMART	surpneu2	411	463	IPR000061	GO:0003723\|GO:0006396
	Trre15g04360	1032	PANTHER	G PATCH DOMAIN-CONTAINING PROTEIN 1	1	1029	-	-
	Trre15g04360	1032	MobiDBLite	consensus disorder prediction	857	877	-	-
	Trre15g04360	1032	MobiDBLite	consensus disorder prediction	992	1009	-	-
	Trre15g04360	1032	MobiDBLite	consensus disorder prediction	878	950	-	-
	Trre15g04360	1032	FunFam	G patch domain-containing protein TGH	377	467	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g04360	Trre-Chr15	54206427	54215053	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g04360	K13123		-	gmx:100796934	1381.7

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre15g04360	15	54206427	54215053	Trre15g04360	15	54206427	54215053	ECH