Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04358 ATGTCAAAGGTTAAAGTTGATCAACTTAATCAATTAAGAGAAATTTTCAAAAGATTCGACATGGATTCAGATGGAAGCCTAACAATGTTAGAGCTAGCGGCACTTATTCGTTCACTAGGCGTAAAACTTTCAGGGGACGAAGTTCAAATCCTGGTAGCTAAAATGGACTCAAACGGAAACGGTTTTGTTGAGTTCGATGAATTGGTTGGAACTATAATGCCAAACATAAATGCAGAAGTATTGGTGAATCAAGAACAACTTATAGGCGTGTTCAAGTGCTTTGATCGCGATGGTAATGGATTCATTTCGGCGGCTGAATTGGCCGGAGCAATGGCTAAAATGGGTCAGCCACTTACTTATAAAGAGCTTATTGAGATGATTAAAGAAGCTGATATGGATGGTGATGGTGTTATTAGTTTTAGTGAGTTTGCTACTATTATGGCTCGTTCTGCTTCTGATTTATTAGGAGGGTTTGGTTATAGAAACAAAACACGTTCATTTCAATTGTAA 510 0.3784 MSKVKVDQLNQLREIFKRFDMDSDGSLTMLELAALIRSLGVKLSGDEVQILVAKMDSNGNGFVEFDELVGTIMPNINAEVLVNQEQLIGVFKCFDRDGNGFISAAELAGAMAKMGQPLTYKELIEMIKEADMDGDGVISFSEFATIMARSASDLLGGFGYRNKTRSFQL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04358 169 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Trre15g04358 169 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Trre15g04358 169 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Trre15g04358 169 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Trre15g04358 169 FunFam Probable calcium-binding protein CML15 1 77 - -
Trre15g04358 169 Pfam EF-hand domain pair 85 147 IPR002048 GO:0005509
Trre15g04358 169 Pfam EF-hand domain pair 10 69 IPR002048 GO:0005509
Trre15g04358 169 Gene3D - 79 156 - -
Trre15g04358 169 SUPERFAMILY EF-hand 5 149 IPR011992 -
Trre15g04358 169 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Trre15g04358 169 FunFam CALML5 isoform 1 80 149 - -
Trre15g04358 169 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Trre15g04358 169 CDD EFh 86 148 IPR002048 GO:0005509
Trre15g04358 169 PANTHER CALCIUM BINDING PROTEIN 83 147 - -
Trre15g04358 169 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Trre15g04358 169 Gene3D - 1 78 - -
Trre15g04358 169 CDD EFh 11 69 IPR002048 GO:0005509
Trre15g04358 169 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Trre15g04358 169 SMART efh_1 11 39 IPR002048 GO:0005509
Trre15g04358 169 SMART efh_1 47 75 IPR002048 GO:0005509
Trre15g04358 169 SMART efh_1 122 150 IPR002048 GO:0005509
Trre15g04358 169 SMART efh_1 86 114 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04358 Trre-Chr15 54177509 54178018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04358 7 156 EF-hand Containing Proteins AT1G18530 76.667 9.12e-84 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04358 K13448 - gmx:100795885 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04358 15 54177509 54178018 Trre15g04358 15 54177509 54178018 ECH