Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04343 ATGCCTACCATCAGTGTAGGACGAGATCGTCTTTTTGCGTCTCTTGGAAAAACTTACACACAAGAGGAATTTGAAGACCTATGCTTCAGTTTTGGGATTGAGCTTGACGATGTTACTACAGAAAAGGCAATTGTAAGAAAAGAGAAGCATTTGGAAGAAGAAGCTGATGAAGATGAAGAAGTTATCTACAAAATTGAAATTCCTGCAAATAGATATGACCTACTCTGCCTTGAAGGACTGGCTCAAGCCCTCCGAGTTTTCCTTGAGTCCCAGGAAATCCCTACTTACAAATTGGCTGACATTAGTAAGGATGCAATGCTTAAAATGCATGTCAAGCCAGAGACATCTCTGATTCGTCCCTTTGTTGTATGTGCCGTATTAAGAGGTTTGAGTTTTGATAAAGCGAGATATAACAGCTTTATTGATCTACAAGACAAGCTGCACCAAAATATCTGTCGGAGAAGAACCCTTGTTGCCATTGGCACTCATGATCTGGATAAATTAGAGGGTCCTTTTACCTATGAGGCTTTACGACCTTCAAGTATTAACTTTACGCCTCTAAAACAGGAAAGAAGCTTCAGGGCTGATGAGCTTATGGAATTCTACAAATCAGATTTGAAACTGAAGAAATTCTTGCATATAATTGAGGACTCTCCCGTTTATCCTGTTATATATGATAGTAAGAGAACTGTTTTATCTTTACCCCCAATTATCAATGGTGCACATTCGGCCATCACTTTGGAGACAAAGAACGTATTCATTGAATGCACTGCCACTGATCTGACAAAGGCGAAAGTTGTTTTAAATACAATGGTAACAGCCTTCGCTGAATATTGTGAAAATAAGCTTGTCATTGAACCAGTTGAAGTGATTTCTTCTGATGGAAAATCTCACATATACCCTGATTTATCTGTCTACAATATGGAAGTTTCTCTATCTTACATTAATCGACTGATTGGAGTATCGTTGGAGGCAGAAGAGGTTACCAAGTTCTTAAACCGGATGCAATTGCATGCCAAGCAATCTACATCTGACAACAAAGAGTCCAACATAATTGTATCGGTACCTCCTACTAGAAGTGATGTTCTTCATCCATGTGATGTTATGGAGGATGTTGCAATAGCTTATGGATTCAATGCTATTATGGATCAAGCAATAGTCGATAATAAGGGGTCAAAGAGATTAGCCGCTTCCTTGACACTACTTCCTCTTAATGAGCTGAGTGATCTTATCAGAATAGAGGTTGCCAAGGTTGGGTTCACAGAGGTTTTGACATTCATACTCTGCTCTAAGAAAGAAATCTCTTCCATGCTAAACCGCAAAGATGATAAATCCAAAGCGGTTATCATTGGAAACCCTAGGTCTTCAGACTTCGAGGCAGTCCGGAATACTCTTATGCCTGGTATTTTGAAAACTGTTGCTCACAACAAGGATCACCCAAAACCCATAAAGATTTTTGAAGTGGGTGATATAGCTATTTTGGCTGACAACGATGTTGGTGCAAAAAATCAACGCAAACTTGCTGCACTATACTGTGGTGCAAATGCAGGATTTGAGATAATTCATGGCTTGGTGGACAGAGTAATGGAAAAGAATGGGATTAACTTTGTTTCATCTGGTGATAAATCAGGGTATTATATTGAGCGGTCAGATGAGCCCGAGTTTCTTGCTGGTAGACAAGCTAGAATTATTTACAAGGGAAAGCAAATTGGGACTTTTGGCATTGTTCATCCGGAGGTATTAAACAACTTTGACATTCCGGATCCCTGCTCCTTTGTCGAACTCAACATTGAAAGTTTCTTGTAA 1806 0.3948 MPTISVGRDRLFASLGKTYTQEEFEDLCFSFGIELDDVTTEKAIVRKEKHLEEEADEDEEVIYKIEIPANRYDLLCLEGLAQALRVFLESQEIPTYKLADISKDAMLKMHVKPETSLIRPFVVCAVLRGLSFDKARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDKLEGPFTYEALRPSSINFTPLKQERSFRADELMEFYKSDLKLKKFLHIIEDSPVYPVIYDSKRTVLSLPPIINGAHSAITLETKNVFIECTATDLTKAKVVLNTMVTAFAEYCENKLVIEPVEVISSDGKSHIYPDLSVYNMEVSLSYINRLIGVSLEAEEVTKFLNRMQLHAKQSTSDNKESNIIVSVPPTRSDVLHPCDVMEDVAIAYGFNAIMDQAIVDNKGSKRLAASLTLLPLNELSDLIRIEVAKVGFTEVLTFILCSKKEISSMLNRKDDKSKAVIIGNPRSSDFEAVRNTLMPGILKTVAHNKDHPKPIKIFEVGDIAILADNDVGAKNQRKLAALYCGANAGFEIIHGLVDRVMEKNGINFVSSGDKSGYYIERSDEPEFLAGRQARIIYKGKQIGTFGIVHPEVLNNFDIPDPCSFVELNIESFL 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04343 601 FunFam Phenylalanyl-tRNA synthetase, beta subunit 306 381 - -
Trre15g04343 601 Pfam B3/4 domain 119 280 IPR005146 GO:0003723|GO:0004826
Trre15g04343 601 ProSiteProfiles B5 domain profile. 303 383 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Trre15g04343 601 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 403 597 IPR041616 -
Trre15g04343 601 SUPERFAMILY PheT/TilS domain 219 282 - -
Trre15g04343 601 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 1 601 IPR045060 GO:0004826|GO:0006432
Trre15g04343 601 Pfam tRNA synthetase B5 domain 308 378 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Trre15g04343 601 Gene3D - 1 88 - -
Trre15g04343 601 FunFam phenylalanine--tRNA ligase beta subunit 100 304 - -
Trre15g04343 601 FunFam phenylalanine--tRNA ligase beta subunit 402 601 - -
Trre15g04343 601 SMART B5_2 305 378 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Trre15g04343 601 NCBIfam phenylalanine--tRNA ligase subunit beta 1 601 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Trre15g04343 601 Gene3D - 306 381 - -
Trre15g04343 601 CDD PheRS_beta_core 403 600 IPR041616 -
Trre15g04343 601 Gene3D Bira Bifunctional Protein; Domain 2 402 601 IPR045864 -
Trre15g04343 601 SUPERFAMILY Putative DNA-binding domain 307 381 IPR009061 -
Trre15g04343 601 FunFam Phenylalanine--tRNA ligase beta subunit 1 89 - -
Trre15g04343 601 SUPERFAMILY Class II aaRS and biotin synthetases 375 600 IPR045864 -
Trre15g04343 601 Gene3D - 100 304 IPR020825 -
Trre15g04343 601 SMART B3_4_2 118 280 IPR005146 GO:0003723|GO:0004826
Trre15g04343 601 Pfam Phe-tRNA synthetase beta subunit B1 domain 1 89 IPR040659 -
Trre15g04343 601 SUPERFAMILY Putative DNA-binding domain 4 93 IPR009061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04343 Trre-Chr15 54027906 54035507 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04343 K01890 - gmx:100805249 1073.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04343 15 54027906 54035507 Trre15g04343 15 54027906 54035507 ECH