Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04340 ATGAAACTCCAAAACACACCTTCCTCTCATGGCTTTCACATGCCTGCGGAATGGGAACGTCACTCCCAGTGTTGGATGGGTTGGCCCGAACGCGCCGATAATTGGCGTGACGGTGCTGTTCATGCTCAACGTGTTTTTGCTAGAGTGGCGTCTGCGATCTCAAAATTCGAGAGAGTAACCGTTTGTGCTAGTTCCGCTCAATGGGAGAATGCACGGAATCAGTTACCGGATCATGTTAGAGTTGTTGAGATTAGTGCTAATGATTCTTGGTTTCGTGATATTGGACCTACTTTTGTTGTGAGAAGAGAAACATCGAAATTGGATGATGCAGATCATAAGATTGCCGGAATTGATTGGACCTTTAATAGCTGGGGAGGTGTAGAAGATGGATGTTACAACGATTGGAGTCTGGACACATTTGTCGCCAAGAAGATTTTGGAAGTTGAGAGGATTCCTACGTTTTCGCATTCTATGGTGCTTGAAGGTGGAAGCATTCATGTGGATGGAGAAGGAACATGTCTTACGACCGAAGAGTGTCTGTTGAACAAGAACAGGAATCCACATTTGACTAAGAACCGAATAGAAGATGAACTTAAGGCATATCTTGGAGTCACAAAGGTTATATGGTTGCCTCGTGGATTATATGGTGATGATGACACAAACGGTCATATTGATAACATGTGCTGTTTTGTGAGGCCTGGTGTGGTTCTTTTGTCGTGGACTGATGATAAAACTGATCCTCAGTATGAAAGATCTGAAGAAGCATATTCTTTACTTTCAAGTGTAACTGATGCCAAGGGTAGAAAAATTGAAGTCATTAAACTCCATGTTCCCGATCCACTATACATGACGGAGAAAGAGGCTGCTGGGGTTTTTCAGGATGTTGAGGCCAAACCAAGACTTCCTGGAACAAGGCTGGCTGCTTCATATGTAAACTTTTACATTGCAAACAGTGGTATCATTGCTCCACAATTTGGAGATAAAAAGTGGGATGATGAAGCTATCAGAGTTCTGTCTAAAGCCTTCCCTCATCATGAAGTTGTGGGAATTGAAGGTTCGAGGGAGATTGTTTTGTCGGGTGGAAATATACATTGCATCACTCAGCAACAACCAGCCATTTAG 1122 0.4323 MKLQNTPSSHGFHMPAEWERHSQCWMGWPERADNWRDGAVHAQRVFARVASAISKFERVTVCASSAQWENARNQLPDHVRVVEISANDSWFRDIGPTFVVRRETSKLDDADHKIAGIDWTFNSWGGVEDGCYNDWSLDTFVAKKILEVERIPTFSHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKNRIEDELKAYLGVTKVIWLPRGLYGDDDTNGHIDNMCCFVRPGVVLLSWTDDKTDPQYERSEEAYSLLSSVTDAKGRKIEVIKLHVPDPLYMTEKEAAGVFQDVEAKPRLPGTRLAASYVNFYIANSGIIAPQFGDKKWDDEAIRVLSKAFPHHEVVGIEGSREIVLSGGNIHCITQQQPAI 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04340 373 Hamap Agmatine deiminase [aguA]. 5 372 IPR017754 GO:0009446|GO:0047632
Trre15g04340 373 PANTHER AGMATINE DEIMINASE-RELATED 2 372 IPR007466 GO:0004668|GO:0009446
Trre15g04340 373 NCBIfam agmatine deiminase 6 372 IPR017754 GO:0009446|GO:0047632
Trre15g04340 373 SUPERFAMILY Pentein 3 372 - -
Trre15g04340 373 Pfam Porphyromonas-type peptidyl-arginine deiminase 13 371 IPR007466 GO:0004668|GO:0009446
Trre15g04340 373 Gene3D - 2 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04340 Trre-Chr15 54002774 54007235 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04340 K10536 - gmx:100811750 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04340 15 54002774 54007235 Trre15g04340 15 54002774 54007235 ECH