Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04306 ATGAGGTGGGAAAAAGTTGAGATTAAGCCGATTGGAAAAGAGGGTGATGGAGGGCCAGGTAAAAGGTGGGGTCATACCTGTAACTCCATTAATGGTGGTAGACATATCTATGTCTTTGGTGGTTATGGCAAAGATAACTGTCAGACCAACCAAGTTCATGTCTTTGACACTGTGAACCAGACATGGAGCCAACCTGCAATAAAAGGCACTCCACCTACTCCAAGGGACAGTCACACTTGCACTGTCGTTGGTCATAAACTATTTGTGTTTGGGGGTACTGATGGAATGAATCCACTCAAGGATTTGCATATTTTAGACACTTCTTTGCAAACTTGGGAATGTCCAATTATAAGAGGAGAAGGGCCAGAGGCACGTGAGGGTCATAGCGCAGCAGTTGTTGGCCAACGGCTCTTCATCTTTGGTGGTTGTGGAAAATCTGCTGATAATAACAATGAGGTCTACTACAATGATCTTTACATACTGAATACAGAGACGCTTGTTTGGATGCGCCCTACAACATCAGGCACACCGCCATCTCCTCGTGATAGCCACACTTTCTCATCGTGGAAGAACAAAATTATTGTGATAGGGGGTGAAGACGGGCATGATTATTATTTGTCTGACGTCCATATCCTTGACACTGATACTCTAATTTGGAGGGAGCTGAGTACATCAGGCCAACTGTTGCCACCTCGGGCCGGTCATTCCACTGTTTCTCTTGGCAAGAACTTGTTTGTTTTTGGTGGATTTACAGACGCCCAAAATCTATACAATGACCTTTATATGCTTGATACTGATACTGGTGTTTGGACAAACGTTACAACTACAACCAATTGTCCTTCTGCTAGATTTTCTGTAGCTGGTGACTGTTTAGACCCATTTAAGGGTGGCGTTCTTGTGTTTATCGGTGGTTGTAACAAGAGTCTTGAAGCTCTGGATGATATGTATTACCTGCATACAGGTTTTGCTAGGGAAGGTGAACAGAGACCAGATAAGTTATCTATGAAGAAGCAATTGAAGCTGAAATGCCAAGAAGAACAAAATCTCAGTCCTGGCCAAAATCAAGTTATGGCTGGATATGGAGTGGGTTCTAACATTGGCCAGGCCATGACTGTGTTGAATTATAGCCAGCCAAATAGACCAAATATCCCGGCAAATCAATCATTGGCTCCTCATGGAAAGAAAACATTTGAAGCCAAGGTTACTGAAAACATCTCAGAAGGATATACTATTGAAACTGTCATTGATGGAAAGCCTCTTCGTGGAATTCTGTTTTTAAACAAACAAAACACTCTTCACCCATCTGCTCATGTTATCAATAGGAAAAGGACTGCTGGTGAAATTGATGGTATCATCTCAAATGGCGCACATTCTAACATTAAGACTGCTAAAGTGAATCCAATGGAAAATAGAAATTCGGAATCTCTCCAGCACAGTTCTGAAGCTGTTGTTGCACTTGCAGCAAGCAATCCAATAACTGCCAATGCCGCTGTTAATCATAAGGTTTATACCAACCCAGAACCAGTAGCTACTTCTTTGAATCGAAATGCTGAAAAAAATGAAACACCAACCTTGGGGGGGAACTCGAAAAATGATGGAGCAAGTGATGCAACAAATTCCAGAGGTGAAGCCCAAACAAATGTTCAAACAAACATGCTGATTTCCAACTTAGAAGCTTCAAGGCCTGATAAAAATAGTGATGCATCAAATTGGAATACACAATTTCTGAAACCTATCACAGCTGAGAGTGCTGTGAATTTGTCAAATCAAGGTGCAGTGATGGATTCTACAACTCCAAGGACAGAAGAATCCAGCGAACCAGCAAAACAAGTTTGA 1836 0.4205 MRWEKVEIKPIGKEGDGGPGKRWGHTCNSINGGRHIYVFGGYGKDNCQTNQVHVFDTVNQTWSQPAIKGTPPTPRDSHTCTVVGHKLFVFGGTDGMNPLKDLHILDTSLQTWECPIIRGEGPEAREGHSAAVVGQRLFIFGGCGKSADNNNEVYYNDLYILNTETLVWMRPTTSGTPPSPRDSHTFSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLIWRELSTSGQLLPPRAGHSTVSLGKNLFVFGGFTDAQNLYNDLYMLDTDTGVWTNVTTTTNCPSARFSVAGDCLDPFKGGVLVFIGGCNKSLEALDDMYYLHTGFAREGEQRPDKLSMKKQLKLKCQEEQNLSPGQNQVMAGYGVGSNIGQAMTVLNYSQPNRPNIPANQSLAPHGKKTFEAKVTENISEGYTIETVIDGKPLRGILFLNKQNTLHPSAHVINRKRTAGEIDGIISNGAHSNIKTAKVNPMENRNSESLQHSSEAVVALAASNPITANAAVNHKVYTNPEPVATSLNRNAEKNETPTLGGNSKNDGASDATNSRGEAQTNVQTNMLISNLEASRPDKNSDASNWNTQFLKPITAESAVNLSNQGAVMDSTTPRTEESSEPAKQV 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04306 611 SMART kelc_smart 243 289 IPR006652 GO:0005515
Trre15g04306 611 SMART kelc_smart 35 85 IPR006652 GO:0005515
Trre15g04306 611 SMART kelc_smart 192 242 IPR006652 GO:0005515
Trre15g04306 611 SMART kelc_smart 86 135 IPR006652 GO:0005515
Trre15g04306 611 SUPERFAMILY Galactose oxidase, central domain 17 223 IPR011043 -
Trre15g04306 611 Gene3D - 148 393 IPR015915 GO:0005515
Trre15g04306 611 Pfam Kelch motif 122 165 - -
Trre15g04306 611 MobiDBLite consensus disorder prediction 1 20 - -
Trre15g04306 611 Pfam Galactose oxidase, central domain 180 225 - -
Trre15g04306 611 Pfam Galactose oxidase, central domain 231 280 - -
Trre15g04306 611 Gene3D - 1 147 IPR015915 GO:0005515
Trre15g04306 611 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 19 168 - -
Trre15g04306 611 MobiDBLite consensus disorder prediction 510 548 - -
Trre15g04306 611 MobiDBLite consensus disorder prediction 582 605 - -
Trre15g04306 611 MobiDBLite consensus disorder prediction 1 21 - -
Trre15g04306 611 Pfam Galactose oxidase, central domain 34 82 - -
Trre15g04306 611 MobiDBLite consensus disorder prediction 582 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04306 Trre-Chr15 53599296 53606304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04306 49 308 Acyl Lipid Metabolism Gene Families AT3G05420 29.964 1.71e-25 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04306 - - cam:101509662 1001.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04306 15 53599296 53606304 Trre15g04306 15 53599296 53606304 ECH