Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04303 ATGGCAATGCAGGAAGCAAACCCTACCTCTGCTCCAAGTCCTCAAGTGGTTGGCAATGCCTTCGTGGAGCAATATTATCATATTCTGCATCAATCTCCAGACTTGGTGCACAGATTCTATCAGGATTCAAGTCTCTTAAGCAGATCCGACAGCAATGGTGTGATGAAGACCGTAACAACGACAAAAGCAATCAATGAAACAATTGTTTCCCTGAACTATGAAGATTGTACAGCAGAAATAAAAACTGCTGATGCTCAGGAGTCCTATGAGAAAGGTGTCATAGTTTTAGTAACTGGATGCTTAACTGGGAAGGATAACGTGAGAAGGAAGTTCGCGCAGACATTCTTTTTGGCTCCACAAGATAAAGGATATTATGTCTTAAATGACGTCTTTAGGTACATTGAGGAGAATGATGCCCCACAGTTAAATTCTGCTCCAATAAATGTCATCAATGAAAATTCCGAGGCAGTGCACATACCAAAATCAGATGATGTGCACCCTTCCAAACATGTTGTGGAAGACCCTGCAACCTCTGCAGAGCGTGAAAACCTTAATAATGGTGCAGAAGTTTATCATCCTCAGGACAACATGGAAGAAGGACCGGCTGTTGATGAAGAGGTTGTCATACCGCCTACTGATTTAAGTGAGAATGATGTTGTTACTATTCATGATTCAACTTCTGCAGTCCAGGATGATGCAGGAAAGACATCATATGCATCAATTGTAATGAAAAGTAAAACAGCATCTGGTCGTGTCTATGTTCCCAGCCGAGCTGCAAGAGTGGCATCTGCTAAATCCAATGAACAAAGGCACGCTCCCACAAAATCTACTCCTGGACCCGAGGCATTTGCTCCTAGTAGTGACAGTGCACCAGGGAGTAGTGATGTTCCTGAAGCTGAAGGTCATTCCATATACATCCGGAACTTGCCATTTAATGCAACAATTGAACTTCTTGATGAGATTTTTAAGAAATTTGGTCCTATTAAGCATGGTGGAGTCCAAGTAAGAAGCAGTAAGCATGGTTTCTGTTTTGGCTTTGTTGAATTTGAGGAACCGAGTTCTGTGCAAAGTGCACTTAAGGCTTCACCGATCACTATTGGTGAGCGACAGGCTGTTATTGAGGAAAAGATATCCACCACACGAGTCAGCGATGGCGGAAGAGGGAGGTATCCTTCAGGAAGAGGTGGTTTCCGAAGCGAGGGTTTCCGAGGGCGTGGGAGATTTGGTGGTGGACGAGGTTATGGAAGAAACGAATTCAGAAACCAAGGGGAATTCTCAGGACGACCTAGGAGTTCTCATCGGCCAAGTCAAAATGGAGGTGGGCGGGGCGGAGGCGGACGTCATGGTGCGGGAAACCATAATGTTACACCAACTACTTCAGTGTGA 1386 0.4466 MAMQEANPTSAPSPQVVGNAFVEQYYHILHQSPDLVHRFYQDSSLLSRSDSNGVMKTVTTTKAINETIVSLNYEDCTAEIKTADAQESYEKGVIVLVTGCLTGKDNVRRKFAQTFFLAPQDKGYYVLNDVFRYIEENDAPQLNSAPINVINENSEAVHIPKSDDVHPSKHVVEDPATSAERENLNNGAEVYHPQDNMEEGPAVDEEVVIPPTDLSENDVVTIHDSTSAVQDDAGKTSYASIVMKSKTASGRVYVPSRAARVASAKSNEQRHAPTKSTPGPEAFAPSSDSAPGSSDVPEAEGHSIYIRNLPFNATIELLDEIFKKFGPIKHGGVQVRSSKHGFCFGFVEFEEPSSVQSALKASPITIGERQAVIEEKISTTRVSDGGRGRYPSGRGGFRSEGFRGRGRFGGGRGYGRNEFRNQGEFSGRPRSSHRPSQNGGGRGGGGRHGAGNHNVTPTTSV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04303 461 MobiDBLite consensus disorder prediction 259 298 - -
Trre15g04303 461 SUPERFAMILY RNA-binding domain, RBD 295 408 IPR035979 GO:0003676
Trre15g04303 461 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Trre15g04303 461 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Trre15g04303 461 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 13 434 IPR039539 -
Trre15g04303 461 Gene3D - 219 381 IPR012677 -
Trre15g04303 461 FunFam Nuclear transport factor 2 family protein 8 137 - -
Trre15g04303 461 FunFam Ras GTPase-activating protein-binding protein 1 291 417 - -
Trre15g04303 461 MobiDBLite consensus disorder prediction 424 438 - -
Trre15g04303 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 361 IPR000504 GO:0003723
Trre15g04303 461 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Trre15g04303 461 CDD RRM_SF 304 361 - -
Trre15g04303 461 MobiDBLite consensus disorder prediction 382 461 - -
Trre15g04303 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 387 IPR000504 GO:0003723
Trre15g04303 461 Gene3D - 6 137 - -
Trre15g04303 461 SMART rrm1_1 303 374 IPR000504 GO:0003723
Trre15g04303 461 MobiDBLite consensus disorder prediction 267 293 - -
Trre15g04303 461 CDD NTF2 13 135 IPR018222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04303 Trre-Chr15 53567682 53571401 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04303 K24983 - gmx:100801253 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04303 15 53567682 53571401 Trre15g04303 15 53567682 53571401 ECH