Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04302 ATGGTTTCATCATTCAGTTTCGCACCTTTTGTATTTCTATTGCTCGTCATTGGGGGCACGGCAAGGCCTTTGTATCCACTTCCTGGCAAAGGTGATGGTGGAAGTAGAAGGCCTCTTCAAACTTTTCGCCCATATAACGTTGCACACAGGGGATCGAACGGAGAAATTCCCGAAGAAACTCGTCAGGCATACCTGAGAGCTATTGAGGAAGGTGCAGACTTCATTGAAACTGATATATTATCTTCCAAAGATGGTGTTCTTATATGTTTCCATGATGTTACCCTTGATGAGACTACTGACATAGCAAAACACAAAGAGTTTGCTAATCGTAAAAGAACATACGAAGTCCAAGGGGTCAATACCACTGGATTTTTCACTGTTGATTTCACATTAAAGGAATTAAAGTCATTGAGGGTGAATCAGAGGTATAGCTTTAGGGATCAACAGTATAATGGAAAATTTCAAATTATCACTTTTGAAGAATTCATTAACATAGCATTGGATGCACCCAGAGTTGTTGGAATATATCCTGAGATAAAAAATCCAGTACTTATCAACCAGTATGTGAAATGGTCGGATGGCAAAAGATTTGAGGACAAGTTTGTCGAAACACTTAAGAAATATGGATACAAGGGTTCATACCTGTCAAAAGATTGGTTGAAACAACCTGCATTTATTCAGTCATTTGCTCCAACTTCACTTGTGTATATATCAAACCAAACGGAGTTGCCTAAGATTTTTTTAATCGATGATGTTGATATTCCAACACAAGACACTAATCAGTCATATTGGGAAATTACATCTGATACATACCTAGACTACATAAAGCAATATATTGTAGGAATTGGACCTTGGAAGGATACGATAGTACCTGTGACTAAAAATTATGTGACAAATCCTTCTGATCTTGTTGCACGGGCACATGCTCGTAATCTGCAGGTTCATCCATACACTTACAGAAATGAGAACAAGTTTTTGCATTTCAACTTTAGTCAAGATCCGTACAAGGAGTATGATTACTGGATCAACAAGATAGGAGTTGATGGTTTGTTTACAGATTTCACCGGTAGTCTTCATAATTTTCAGGAATGGACCTCCCCTAATCGTCAAGATGACACGATTGAATCCGAACTATTACATAAAATTGCTTTGTTGGTATCCCCTTATGAATGA 1173 0.3794 MVSSFSFAPFVFLLLVIGGTARPLYPLPGKGDGGSRRPLQTFRPYNVAHRGSNGEIPEETRQAYLRAIEEGADFIETDILSSKDGVLICFHDVTLDETTDIAKHKEFANRKRTYEVQGVNTTGFFTVDFTLKELKSLRVNQRYSFRDQQYNGKFQIITFEEFINIALDAPRVVGIYPEIKNPVLINQYVKWSDGKRFEDKFVETLKKYGYKGSYLSKDWLKQPAFIQSFAPTSLVYISNQTELPKIFLIDDVDIPTQDTNQSYWEITSDTYLDYIKQYIVGIGPWKDTIVPVTKNYVTNPSDLVARAHARNLQVHPYTYRNENKFLHFNFSQDPYKEYDYWINKIGVDGLFTDFTGSLHNFQEWTSPNRQDDTIESELLHKIALLVSPYE 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04302 390 CDD GDPD_ScGlpQ1_like 44 355 - -
Trre15g04302 390 Pfam Glycerophosphoryl diester phosphodiesterase family 49 356 IPR030395 GO:0006629|GO:0008081
Trre15g04302 390 SUPERFAMILY PLC-like phosphodiesterases 44 360 IPR017946 GO:0006629|GO:0008081
Trre15g04302 390 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 41 371 - -
Trre15g04302 390 FunFam Glycerophosphodiester phosphodiesterase GDPD5 42 361 - -
Trre15g04302 390 Gene3D Phosphatidylinositol (PI) phosphodiesterase 43 361 IPR017946 GO:0006629|GO:0008081
Trre15g04302 390 ProSiteProfiles GP-PDE domain profile. 44 362 IPR030395 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04302 Trre-Chr15 53553044 53556196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04302 9 389 Acyl Lipid Metabolism Gene Families AT1G74210 75.393 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04302 K01126 - gmx:100778145 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04302 15 53553044 53556196 Trre15g04302 15 53553044 53556196 ECH