Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04298 ATGGTGCAAATAGAAAAACTATATTCTCTAATGTTTAGGCCCGGCCCATTACCGAAGAGTCAAGACAGAACAGAAGCATCTATCGACAACAACAGTAACACAACACTTCATCACGCTTTCGATCTGAACTCTCTCCGTTCTGCAACAATGTCAGAAACCCAAAGAGCTTCTTCATCTTCAACAACCGTTCTTGATACTTTAGGCGAAGAAATCGTTAGAATTATCACTCCCGTTTCAATCTGCATGTTCCTTGTTGTAATCTTAGTTTCAATTCTCAACACAAACGATTCACCAACCATTTCCACCATAGCCAACATAGCATACGATGAAACAACCTCAGATTCTTCCTGGGACAAATTCCTCGGTGCACTTCTAAATTCCTTATCATTCGTCGTTGTCGTAACTTTCGCCACTTTCTTTTTAGTTCTCCTCTTCTATTTCCGATGTATCACTTTCTTAAAACTCTACATGGCTTTTTCTTCATTTGTTGTATTAGGTTTTCTTGGTGGTGAAATTTCTTTGTTTTTGATTCAACATTTTAGTACTCCAATTGATTGTATAACGTTTTCAATTGTTTTGTGTAATTTTGCTGTTGTTGGTGTTTGTGCTGTTTTTATGTCGAAAATGGCTATTTTTGTTACACAAGGTTATTTGGTAATTATTGGAATATTGGTTGCTTATTGGTTTACTATGTTGCCTGAATGGACAACATGGGCTATGCTTGTTACTATGGCTTTGTATGATCTTGCTGCTGTTTTGTTGCCTGTTGGACCTTTGAGGCTTTTGGTTGAACTTGCAATATCAAGGGATGAAGAAATTCCGGCTTTGGTTTATGAGGCTAGGCCGGTGAGTAATGATAGTTTGGATCATGTTGCGGCTCGGAGGAGGTTATGGAGAGAGAGGAGGATTGAGAATTCAAATATGATGGTTACTGAGAATGGAAGTTCCGTGTTGGGTAGTAGTGGACTTAATGTTGAACAATCACACTCAAATTCAGATGTGAACGATGTTCTTGGTTCGAATTTAGACGGTAATACCCCGGATGACGTGAATTTGGCTCCGGAAAATGCTTCGAATTTGAATTCTAGTAGTTCTTATGGTGCGTGTAATTTGGTAAGAGCCGAAGAGGGGCGAGTGCAGGTTCGAGAAACTGATTCAGATCTTGTCACGCCCTTGATAGGTCGTGGACCGAATGTGCAACTACCTATAGGAGAGGATGCTGCGTCGAATGAGAATTTGATGTTGGAGGGAATTGGATTGGCTTCGTCTGGTGCAATCAAGTTGGGGCTTGGCGATTTTATCTTCTATAGTGTTTTGGTTGGCAGGGCTGCAATGTATGATTTTATGACAGTTTATGCATGTTATCTTGCAATTATCGCTGGGCTCGGCATAACTTTGATGCTTTTGGCGTTTTATCAGAAAGCCTTGCCTGCTCTACCTGTGTCAGTAGCACTAGGTGTGTTGTTTTATTTCTTGACCAGGTTACTACTTGAAGTATTTGTAGTACAGTGTTCCTTGAATCTCTTGATGTTCTAA 1536 0.401 MVQIEKLYSLMFRPGPLPKSQDRTEASIDNNSNTTLHHAFDLNSLRSATMSETQRASSSSTTVLDTLGEEIVRIITPVSICMFLVVILVSILNTNDSPTISTIANIAYDETTSDSSWDKFLGALLNSLSFVVVVTFATFFLVLLFYFRCITFLKLYMAFSSFVVLGFLGGEISLFLIQHFSTPIDCITFSIVLCNFAVVGVCAVFMSKMAIFVTQGYLVIIGILVAYWFTMLPEWTTWAMLVTMALYDLAAVLLPVGPLRLLVELAISRDEEIPALVYEARPVSNDSLDHVAARRRLWRERRIENSNMMVTENGSSVLGSSGLNVEQSHSNSDVNDVLGSNLDGNTPDDVNLAPENASNLNSSSSYGACNLVRAEEGRVQVRETDSDLVTPLIGRGPNVQLPIGEDAASNENLMLEGIGLASSGAIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGITLMLLAFYQKALPALPVSVALGVLFYFLTRLLLEVFVVQCSLNLLMF 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04298 511 Gene3D Presenilin 414 503 IPR042524 -
Trre15g04298 511 Pfam Presenilin 68 501 IPR001108 GO:0004190|GO:0016020|GO:0016485
Trre15g04298 511 PANTHER PRESENILIN 46 511 IPR001108 GO:0004190|GO:0016020|GO:0016485
Trre15g04298 511 PRINTS Presenilin family signature 248 265 IPR001108 GO:0004190|GO:0016020|GO:0016485
Trre15g04298 511 PRINTS Presenilin family signature 75 85 IPR001108 GO:0004190|GO:0016020|GO:0016485
Trre15g04298 511 PRINTS Presenilin family signature 231 238 IPR001108 GO:0004190|GO:0016020|GO:0016485
Trre15g04298 511 SMART psh_8 121 497 IPR006639 GO:0004190|GO:0016020
Trre15g04298 511 FunFam Presenilin 403 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04298 Trre-Chr15 53517588 53519123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04298 50 511 Miscellaneous Gene Families AT2G29900 57.849 5.62e-154 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04298 K04505 - gmx:100799643 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04298 15 53517588 53519123 Trre15g04298 15 53517588 53519123 ECH