Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04270 ATGTTCAATTCAAAGAAATCTCCTGTGAAAGTTGGTACATCCAACTCCGTTAGTCCTGTCAATGATGTTAAATCCTGGTCAAACCCGTTTGACTCTGATGACGACGAAAAGGATAACAAAAAGTATAATTCCTCGAAGAAGACTTCTTCAGAACGAGCATTAGTTACTTTAGAAGTGAACACCAACCCATTTGATGACATCAATGACACTAAGAAATCGTCATCATCTACGTATGCTCATCAGTCAGCAGACCGGAACAGTAAGAAGTCTTCATCATCTATGTATGCTGGTCAATCAGTGGACCGGAACAGGTACAAGAATAATTTTCGTGATTCTGGTGGATTAGAGAATCAATCCGTACAGGAGTTGGAGAGTTATGCTGTTTACAAGGCTGAGGAAACTACAAAATCGGTCCACAATTGTTTGAAGATAGCAGAGAATATAAGAGAGGATGCTACCAAGACTTTAGTCACCCTTCATCATCAGGGTGAGCAAATTACCAGGAATCACCAAGTTGCTGCTGACATTGATAGAGATTTAAGTCGGGGAGAAAAGCTTTTAGGAAATCTTGGTGGCCTCTTCTCCAAAACTTGGAAACCAAAGAAGACCCGTACAATAACAGGCCCTGTTATTTTTGGAGATGATCCGGTTAGAAGAAAGGGAAACCACTTGGAACAGAGAGAGAAGTTGGGACTGACTTCTGCATCCAATGGGCAGTCCAAGCTGCGGACTCCACCTCAGGAACCAACAGCCGCACTTGAAAAAGTCGAGTTTGAAAAGGAGAAGCAAGATGATGCACTGTCAAATTTAAGTGATCTATTGGGAGAGCTTAAAGACATGGCTATTGACATGGGATCGGAAATTGAAAGGCACAACAAAGCCTTGAGTCATCTAGAAGACGATGTGGATGAGTTGAATTTCCGAGTGAAAGGTGCTAATCAACGCGGTCGTCGTTTACTCGGAAAATGA 969 0.4221 MFNSKKSPVKVGTSNSVSPVNDVKSWSNPFDSDDDEKDNKKYNSSKKTSSERALVTLEVNTNPFDDINDTKKSSSSTYAHQSADRNSKKSSSSMYAGQSVDRNRYKNNFRDSGGLENQSVQELESYAVYKAEETTKSVHNCLKIAENIREDATKTLVTLHHQGEQITRNHQVAADIDRDLSRGEKLLGNLGGLFSKTWKPKKTRTITGPVIFGDDPVRRKGNHLEQREKLGLTSASNGQSKLRTPPQEPTAALEKVEFEKEKQDDALSNLSDLLGELKDMAIDMGSEIERHNKALSHLEDDVDELNFRVKGANQRGRRLLGK 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04270 322 MobiDBLite consensus disorder prediction 48 103 - -
Trre15g04270 322 MobiDBLite consensus disorder prediction 230 246 - -
Trre15g04270 322 MobiDBLite consensus disorder prediction 230 251 - -
Trre15g04270 322 FunFam SNAP25 homologous protein SNAP33 254 321 - -
Trre15g04270 322 MobiDBLite consensus disorder prediction 1 27 - -
Trre15g04270 322 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 28 322 - -
Trre15g04270 322 Gene3D - 254 321 - -
Trre15g04270 322 SUPERFAMILY SNARE fusion complex 258 320 - -
Trre15g04270 322 CDD SNARE_Qc 260 318 - -
Trre15g04270 322 CDD SNARE_SNAP25N_23N_29N_SEC9N 126 189 IPR044766 GO:0005484|GO:0031201
Trre15g04270 322 FunFam SNAP25 homologous protein SNAP33 114 191 - -
Trre15g04270 322 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 257 319 IPR000727 -
Trre15g04270 322 Gene3D - 114 191 - -
Trre15g04270 322 MobiDBLite consensus disorder prediction 1 114 - -
Trre15g04270 322 Coils Coil 288 315 - -
Trre15g04270 322 SMART tSNARE_6 252 319 IPR000727 -
Trre15g04270 322 SMART tSNARE_6 123 190 IPR000727 -
Trre15g04270 322 MobiDBLite consensus disorder prediction 28 47 - -
Trre15g04270 322 SUPERFAMILY SNARE fusion complex 118 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04270 Trre-Chr15 53330190 53332050 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04270 K18211 - gmx:100809874 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04270 15 53330190 53332050 Trre15g04270 15 53330190 53332050 ECH