Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04257 ATGGTTGGTGAGATTGATACTACATCAATTGAACCTGTCCGGGTTGGTGTCTCTTTATTTGACGATAAAGGTGATTCGGATAAATTTCTTCCTGCAAGGAATAAGCGTGACTATGAAAAAGAGATTGAGGATTTGACGAAGGAATTGGACAACTACAAGACACAATTAGAAGCAAAGCATGTTGCACACATCAAAGCGCTTCTTAAGCCGGAACAAAACCAGAAGATGATTCATGAATTGTCTACATTGTTGAAAAACTCTGATATTGAAAGAAACAAGTATGTGAATGAATGTTCTGAGGGTAAAGCTAGCAAAGACGAACTTGAATCAATGACAAAAGAGATGACCGATCTTAAATTAGAAACAGAAAAACTCCGGGACCAGCTTTCACATGTTTTGGTTGAATTGAAGGCCACACAAAGAGAGCTTCTTAATAAAGATACCGAGATTTTTGCTGCTAGAGATTCAGAATCAAACGCTGTCACTAAAGCGGAACAGTTGGAAAATGACTTGAAGTTGGAAAAGGAACTGAAAGAAGAACTTCTGCATCAAGTAAATGAGCTTAGTGAAATTATTCACAGGTCAAAACTTGCTGCTATTAAAGTCGAGAAACGAAATCTTGGTATGTTGTATCAGAAAGATGAGAAAATTCAATTAGCTACACAAGATAATGATCAAGCACAACTAGAGATGGAAGATATGAGAAAGCATATAGATATTCTACATGGATTGCAAAATAAACCAATGGTTGATGAAGCACACATTTTTTCCGAGGATTCAAACCTGTTAAAGAATGACATAGAACAAAAGGAAAGATATATCATGGATCAATCTGTTTATATTGAAAGATTAGAAATGGAATTGAATCAGTTAAAAAATGAACTTACAAGTGCAAAGGAGGAGATAAATGGATTGAATATTAGCAATGAAACACTCACAAGTGAGTTGCACAAGGCCAAAGATGAGTTGAAGATGAATAAGGAGAAAGACATTGAAGCAGAAGTGGAGATTGCATTGCTGAAATCTCATCTTCAAGAATGTAGGTCGGCTTACAAGAATGAATATGTCAATGAAGCTGAAGAGAGGAATAGTGAGAAGAACAGTGACAATATCACAATCTCTTTGGTTAAAGAGGCTGAAAAAGGAAACCATTTAGAGTTGGCATTGGTGAAAAAGGAGCTTGAAAATGCATCATTGAAGATTTCCGAGATGAGGACTCGTGCAGAACAGGCTATGAGCAGAGCTGAGTTAGCTGAGAATAGTAAAGCAGCATTGGAGGAGAAAATAAGGAGACACCGTGAACATAGGCTGAGAAAGAAGGCGGCCCTAACTGCGCTTCGGGAGGAATCTACCCCAAAACCATTTACTCCTTCAACATCATATGGAACACCAAGTATACATCAGCCATTAGGTAAAGTTCTCAATATGAAGTTGTAA 1437 0.373 MVGEIDTTSIEPVRVGVSLFDDKGDSDKFLPARNKRDYEKEIEDLTKELDNYKTQLEAKHVAHIKALLKPEQNQKMIHELSTLLKNSDIERNKYVNECSEGKASKDELESMTKEMTDLKLETEKLRDQLSHVLVELKATQRELLNKDTEIFAARDSESNAVTKAEQLENDLKLEKELKEELLHQVNELSEIIHRSKLAAIKVEKRNLGMLYQKDEKIQLATQDNDQAQLEMEDMRKHIDILHGLQNKPMVDEAHIFSEDSNLLKNDIEQKERYIMDQSVYIERLEMELNQLKNELTSAKEEINGLNISNETLTSELHKAKDELKMNKEKDIEAEVEIALLKSHLQECRSAYKNEYVNEAEERNSEKNSDNITISLVKEAEKGNHLELALVKKELENASLKISEMRTRAEQAMSRAELAENSKAALEEKIRRHREHRLRKKAALTALREESTPKPFTPSTSYGTPSIHQPLGKVLNMKL 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04257 478 MobiDBLite consensus disorder prediction 451 466 - -
Trre15g04257 478 Coils Coil 274 329 - -
Trre15g04257 478 MobiDBLite consensus disorder prediction 449 478 - -
Trre15g04257 478 Coils Coil 164 191 - -
Trre15g04257 478 Coils Coil 108 128 - -
Trre15g04257 478 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 3 433 - -
Trre15g04257 478 Coils Coil 387 435 - -
Trre15g04257 478 Coils Coil 35 62 - -
Trre15g04257 478 Pfam Weak chloroplast movement under blue light 5 364 IPR008545 -
Trre15g04257 478 Coils Coil 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04257 Trre-Chr15 53237166 53239487 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04257 - - cam:101496589 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04257 15 53237166 53239487 Trre15g04257 15 53237166 53239487 ECH