Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04253 ATGACTTCCTCGTCGCACCGTTCTGGCGGCGAAGGCGACGCCAACGATGACAAAAGGCCGAGATTTTTTGAGACAAAGACGAAAAACATCTGTTGGACAAAGGCTGACACTGTTCCCGGCCGTCACCCAGAAAGGTGGCGCAAAGACGCCGCCGGTAACATTGTCTGTAAACGTTTCTTCAACTGCCTTGGCTGTCTCTGCTACGAGTACGATCACATCATCCCTTATTCTAAAGGGGGTGAATCAACGGCCGATAATTGCCAAATACTTCAATCAAGAGTGAACAGATTAAAATCAAACAAAGATCATATTGATTCGGATAAGTTGAGAGGCTACTCTTGTGATGTTAATTTTACTGATAAGGAGCTTGACATAATTGAGATGGCTGTTTATGGCGATGTAATCCGGCCAGGAAACCAGTGTAGATGCAGAACTATTGATGAAATGCTTGGAAAATTCAAGGCCAAAGACAACACAAATGCATGCAAGTTGCCATAG 498 0.4458 MTSSSHRSGGEGDANDDKRPRFFETKTKNICWTKADTVPGRHPERWRKDAAGNIVCKRFFNCLGCLCYEYDHIIPYSKGGESTADNCQILQSRVNRLKSNKDHIDSDKLRGYSCDVNFTDKELDIIEMAVYGDVIRPGNQCRCRTIDEMLGKFKAKDNTNACKLP 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04253 165 CDD HNHc 57 99 IPR003615 -
Trre15g04253 165 PANTHER HNH ENDONUCLEASE 13 145 - -
Trre15g04253 165 SMART HNH_5 50 96 IPR003615 -
Trre15g04253 165 MobiDBLite consensus disorder prediction 1 20 - -
Trre15g04253 165 Pfam HNH endonuclease 67 100 IPR002711 GO:0003676|GO:0004519|GO:0008270
Trre15g04253 165 Gene3D - 23 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04253 Trre-Chr15 53178519 53180967 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04253 - - psat:127073757 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04253 15 53178519 53180967 Trre15g04253 15 53178519 53180967 ECH