Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04246 ATGGGAAAAGAGAATACAACAGTTCACAAAAGAGCCAGTAGCGCAGGTTTACCAACAACCAACACCAACAGCAAAAACCGCCGTGGCCGACAGATCCACAAAACATTCAACAACATTAAAATCACAATCCTCTGTGGCTTTGTAACAATCCTCGTCCTACGTGGCACTATCGGCGTTAATCTCAGTTCCTCCGACTCCGACGCCGTCGACCAAAACATCATTGAAGAAACAAACCGTATCCTCGCCGAGATCCGATCCGACGCCGACCCATCTGATCCTAATGATAAAGATGAAATCTTTTTCAATCCAAACGCTACTTTCACACTTGGCCCCAAGATTTCTGATTGGGATTCTCAGCGTAAGACATGGCTTGTTCAAAACCCTGAATACCCTAATTTTGTTAGAGGTAAAGCTCGAATCTTGTTACTAACTGGGTCTCCTCCTAAGCCTTGTGATAACCCAATTGGGGATCATTACTTGTTGAAGTCTATTAAGAATAAGATTGATTATTGTAGATTACATGGGATTGAAATTGTTTATAATATGGCACATCTTGATATTGAACTTGCTGGTTATTGGGCTAAATTGCCTATGATTAGGAGGTTGATGTTGTCACATCCTGAAGTTGAATGGATTTGGTGGATGGATAGTGATGCATTGTTTACTGATATGGTTTTTGAGCTTCCTTTGTCTAAGTATGATAATCATAATTTGGTTATTCATGGTTATCCTGATTTGTTGTTTGATCAGAAGTCATGGATTGCTATCAATACTGGTAGTTTTCTTTTTAGGAATTGTCAGTGGTCTTTGGATTTGCTTGATGAGTGGGCTCCAATGGGTCCTAAAGGTCCTGTTCGCGAAGAGGCTGGGAAGGTCTTGACGGCTAATCTTAAAGGGAGACCGGCTTTTGAGGCTGATGATCAGTCTGCTTTGATTTATTTGTTGCTGTCTAAGAAGGAAAAATGGATGGATAAGGTGTTTCTTGAGAATTCTTATTATTTGCATGGTTATTGGGCTGGGTTGGTTGATCGGTATGAGGAGATGATTGAGAAGTATCATCCGGGATTAGGGGATGAGAGGTGGCCGTTTGTGACTCATTTTGTGGGTTGTAAGCCGTGTGGAAGCTATGGAGATTATCCGGTTGAGAGGTGTCTCAGTAGTATGGAGAGAGCTTTCAATTTTGCTGATAATCAAGTGCTTAAACTCTACGGGTTCAGGCATCGTGGTTTGTTGAGTCCTAAGATTAAGAGAATTAGAAATGAGACGGTTACTCCTTTGGAGTTTGTCGACCAGTTTGATATTCGAAGGCATTCTACAGAAAGTAGTGAATCAAAAAGCTAG 1341 0.4131 MGKENTTVHKRASSAGLPTTNTNSKNRRGRQIHKTFNNIKITILCGFVTILVLRGTIGVNLSSSDSDAVDQNIIEETNRILAEIRSDADPSDPNDKDEIFFNPNATFTLGPKISDWDSQRKTWLVQNPEYPNFVRGKARILLLTGSPPKPCDNPIGDHYLLKSIKNKIDYCRLHGIEIVYNMAHLDIELAGYWAKLPMIRRLMLSHPEVEWIWWMDSDALFTDMVFELPLSKYDNHNLVIHGYPDLLFDQKSWIAINTGSFLFRNCQWSLDLLDEWAPMGPKGPVREEAGKVLTANLKGRPAFEADDQSALIYLLLSKKEKWMDKVFLENSYYLHGYWAGLVDRYEEMIEKYHPGLGDERWPFVTHFVGCKPCGSYGDYPVERCLSSMERAFNFADNQVLKLYGFRHRGLLSPKIKRIRNETVTPLEFVDQFDIRRHSTESSESKS 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04246 446 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 20 431 IPR008630 GO:0016020|GO:0016757
Trre15g04246 446 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 137 284 IPR029044 -
Trre15g04246 446 MobiDBLite consensus disorder prediction 1 31 - -
Trre15g04246 446 FunFam xyloglucan 6-xylosyltransferase 2 136 287 - -
Trre15g04246 446 MobiDBLite consensus disorder prediction 7 26 - -
Trre15g04246 446 Pfam galactosyl transferase GMA12/MNN10 family 137 375 IPR008630 GO:0016020|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04246 Trre-Chr15 53089653 53090993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04246 1 446 Glycosyltransferase AT5G07720 78.118 0.0 762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04246 K08238 - gmx:100793238 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04246 15 53089653 53090993 Trre15g04246 15 53089653 53090993 ECH