Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04237 ATGGGTTCTCTTCCTCTCAGCGATGATCGATCGGAGATTGTATTCTTTGACGTAGAAACCACCGTTCCTACCCGACCTGGTCAGGGTTTTGCACTTTTAGAATTCGGAGCTATTCTGGTGTGTCCAAGGAAACTGACAGAACTTCGAAGCTACTCAACTTTGGTCCGACCCGCTGATCTTTCACTCATTTCTCCGTTATCGGAGCGATGTAATGGAATAAACGCCGAAGCTGTTTCCAACGCTCCTACGTTTTTGGATATTGCTCCCGCTGTCTACGACCTTCTTCACGGGAGGATTTGGGCGGGTCACAATATCTTGAGATTTGACTGTGTGCGGATTAGAGATGCATTTGCTGCTATTAATCAGACACCACCTGAACCTAAGGGTACAATTGATTCTTTGGTTTTGTTGACTCAAAAGTTTGGAAGAAGAGCCGGTAATATGAAGATGGCTACTCTTGCTACCTATTTTGGTCTTGGACAGCAGACACACAGGAGCTTAGATGATGTTCGGATGAATCTTGAAGTTCTCAAATACTGTGCAACAGTTTTATTCTTGGAGTCAAGTCTCCCAGATATATTCACTGAAAATTGTTGGGTTTCACCAAATGCTGTTACAAGAAGTCGCAGTAATGGTAAATCTCGACCAGAAGGGGGTTTATCAAATATGAATAAGGACTCTGTGTTGGCATCATCTCCTGAAACTATAGATAAAAATCATCCAATCCTTTCTCTTGCAACAAGCAACACAAAAGTGGCTGTCTCAAATGTTGCACATTCCACTACAGCTCAATCAGATTCTTTTAGCTTTCGTGATCTTCAAGATGAAATTAATAGAGAATCCATTAGGACAGATATTGCCATGGATGAAAAATCCATGCAATATTCACCGGATTCATCAGTCTCTTCTTCTGTGCCTCAGGCTTGCAGCAGCTCTATCGCAATTTTAGAGCCTGAAAAAATAAGTATTTCTTCTATTGATGCATCTCTTGTTCCATTTTATCGTGGCAGTCAAAGGATAGAATTGCTTCATGAAGGCTTCCCATTTCAGCTTCATTGTCCCGGTTTGAAAGTGCGGTTTGGAATAAGCACAAAGTTTGTTGACAGTGCTGGTCGGCCACGGTTAAACTTCGTGGTTGATCCATCACCAAGTTTATGCAATGTTCTTGATGCATGTGACAATGTTGCACGCAAGTTATCCTCAGAATCTGGTAGCGGCTCTGATTGGAGGCCAATTGTTATTAGGAAAGAAGGGTTCTTCAACTATCCTACTATCAGATTGCATATACCTACAGCAGTATGTGAAGAGATTGCCATTTACGCAACAGAAATATATCAAAAAGAATCATCTGGATCTGTGCAAAGGGTTCTTTCCAGCAAGTTCGACGCTGCAGAACTTGATTCCTTGTTCAAGCCTGGGACATTTGTTGATGCAGTCTTCTCCTTGGATCCATATGACTATCATCAGAATGCAGGGGTTAAATTAGTTGCCAAGAAATTGATCATTCACTGCATGTAG 1518 0.419 MGSLPLSDDRSEIVFFDVETTVPTRPGQGFALLEFGAILVCPRKLTELRSYSTLVRPADLSLISPLSERCNGINAEAVSNAPTFLDIAPAVYDLLHGRIWAGHNILRFDCVRIRDAFAAINQTPPEPKGTIDSLVLLTQKFGRRAGNMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTENCWVSPNAVTRSRSNGKSRPEGGLSNMNKDSVLASSPETIDKNHPILSLATSNTKVAVSNVAHSTTAQSDSFSFRDLQDEINRESIRTDIAMDEKSMQYSPDSSVSSSVPQACSSSIAILEPEKISISSIDASLVPFYRGSQRIELLHEGFPFQLHCPGLKVRFGISTKFVDSAGRPRLNFVVDPSPSLCNVLDACDNVARKLSSESGSGSDWRPIVIRKEGFFNYPTIRLHIPTAVCEEIAIYATEIYQKESSGSVQRVLSSKFDAAELDSLFKPGTFVDAVFSLDPYDYHQNAGVKLVAKKLIIHCM 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04237 505 MobiDBLite consensus disorder prediction 205 227 - -
Trre15g04237 505 Pfam Exonuclease 14 177 IPR013520 -
Trre15g04237 505 SUPERFAMILY Ribonuclease H-like 11 182 IPR012337 -
Trre15g04237 505 PANTHER DNA POLYMERASE III SUBUNIT EPSILON 11 493 - -
Trre15g04237 505 CDD DEDDh 14 178 - -
Trre15g04237 505 FunFam Exonuclease family protein 6 184 - -
Trre15g04237 505 SMART exoiiiendus 12 186 IPR013520 -
Trre15g04237 505 Gene3D - 5 183 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04237 Trre-Chr15 53036222 53039245 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04237 - - ccaj:109808157 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04237 15 53036222 53039245 Trre15g04237 15 53036222 53039245 ECH