Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04232 ATGGCTTCAACTACATCTTCCCTCTGTTCTTCTACCCTTCAATCTCAGATCAATGGACTTTCCCTTCACAAGACTTCTCGTTTCAATCCATCTTCTCTCACTTTTTCCAGGAGGAAAGTTTCAACTGTGGTCAAGGCTACATCTCGTGTTGACAAGTTTTCAAAAAACGATATTATTGTTTCTCCATCTATTCTTTCTGCTAACTTTGCAAAATTGGGAGAACAGGTGAAAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCACGTTGACGTTATGGATGGCCGTTTTGTGCCAAATATTACAATTGGACCTCTTGTGGTTGATGCATTGCGCCCTGTGACAGATCTACCTTTGGATGTTCACTTGATGATTGTAGAACCAGACCTGCGGGTGCCAGATTTCATCAAAGCTGGAGCTGACATAGTCAGTATTCATTGTGAACAATCTTCCACTATCCATTTGCATCGTGCCGTTAATCAAGTGAAAAGTCTGGGAGCTAAAGCTGGAGTTGTCCTAAACCCTGGTACCCCACTAAGTGCAATTGAATATGTCCTTGAAGTGGTTGATTTGGTCTTAATTATGTCCGTAAACCCTGGCTTTGGTGGCCAGAGTTTTATCGAGAGTCAAGTAAAGAAAATATCTGATTTGAGAAGATTGTGCGTGGAGAAGGGTGTGAATCCATGGATTGAAGTGGATGGTGGAGTTACCCCGGCAAATGCTTACAAGGTGATTGAGGCTGGAGCTAATGCACTGGTTGCTGGTTCCGCTGTGTTTGGAGCTAAAGATTATGCTGAAGCTATAAGAGGAATCAAAGCTAGCAAAAGACCTGCGCCAGTTGCTGTGTGA 846 0.4338 MASTTSSLCSSTLQSQINGLSLHKTSRFNPSSLTFSRRKVSTVVKATSRVDKFSKNDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPDLRVPDFIKAGADIVSIHCEQSSTIHLHRAVNQVKSLGAKAGVVLNPGTPLSAIEYVLEVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCVEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIRGIKASKRPAPVAV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04232 281 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 58 273 IPR000056 GO:0005975|GO:0016857
Trre15g04232 281 Pfam Ribulose-phosphate 3 epimerase family 60 258 IPR000056 GO:0005975|GO:0016857
Trre15g04232 281 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 87 101 IPR000056 GO:0005975|GO:0016857
Trre15g04232 281 FunFam Ribulose-phosphate 3-epimerase 55 277 - -
Trre15g04232 281 Gene3D Aldolase class I 48 277 IPR013785 -
Trre15g04232 281 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 191 213 IPR000056 GO:0005975|GO:0016857
Trre15g04232 281 SUPERFAMILY Ribulose-phoshate binding barrel 52 274 IPR011060 -
Trre15g04232 281 NCBIfam ribulose-phosphate 3-epimerase 60 271 IPR026019 GO:0004750|GO:0006098
Trre15g04232 281 CDD RPE 59 271 IPR000056 GO:0005975|GO:0016857
Trre15g04232 281 Hamap Ribulose-phosphate 3-epimerase [rpe]. 57 273 IPR026019 GO:0004750|GO:0006098
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04232 Trre-Chr15 52997741 53001017 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04232 K01783 - gmx:100786514 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04232 15 52997741 53001017 Trre15g04232 15 52997741 53001017 ECH