Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04223 ATGAGGGGTGGTGGTGGCGGTAGTGGCAGACCGGAAAGGAGGAGAAGAAGAAACTCAACCTCGCCGTTGAAGGATCGAACTGAAACTACTTCATCCAAATTATCGTCTTCTCCTCCTTCTTCTTCATCTTCTTCATCTAAACTAAGCTCTTCATCCTCTGCTACCACTCTCGTCGATGATGACTCAAACACTGTTCTTTTCGACTATTACACTAACCCTAACCCTCGAAGCTTCCCTCACAGTGTTAAACAGAAATGTTGGGAAAAGGCTGACAAGGTAAAAGGGCGTGACCCTGATCGATGGCGAAGGGATCCCCTTGGTAACCTTATCTTTCGTAAGCTCGTAGGTTGCCCTGGTTGTTTATGTCATGACTATGATCACATTGTTCCTTATTCTAAGGGGGGCAAAAGCACGCTGGAAAACTGTCAAGTATTACAGGCCACAGTTAATCGGTCAAAGGGTAACCGAACAGATATCTCCAAATCTGATCTTATTCAGAAGAGTTCTTATTGCAGGGTTTCAGATCGTGATATGGATCTTCTGGAATTGTCTGCTTTTGGCAATGTTCGACATGGACAAGATACCGGAGGATGTAGAATTCAATGA 606 0.4455 MRGGGGGSGRPERRRRRNSTSPLKDRTETTSSKLSSSPPSSSSSSSKLSSSSSATTLVDDDSNTVLFDYYTNPNPRSFPHSVKQKCWEKADKVKGRDPDRWRRDPLGNLIFRKLVGCPGCLCHDYDHIVPYSKGGKSTLENCQVLQATVNRSKGNRTDISKSDLIQKSSYCRVSDRDMDLLELSAFGNVRHGQDTGGCRIQ 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04223 201 Pfam HNH endonuclease 123 156 IPR002711 GO:0003676|GO:0004519|GO:0008270
Trre15g04223 201 MobiDBLite consensus disorder prediction 7 23 - -
Trre15g04223 201 CDD HNHc 109 154 IPR003615 -
Trre15g04223 201 MobiDBLite consensus disorder prediction 24 57 - -
Trre15g04223 201 PANTHER HNH ENDONUCLEASE 14 201 - -
Trre15g04223 201 SMART HNH_5 105 151 IPR003615 -
Trre15g04223 201 MobiDBLite consensus disorder prediction 1 57 - -
Trre15g04223 201 Gene3D - 84 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04223 Trre-Chr15 52867675 52871495 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04223 - - gmx:100500174 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04223 15 52867675 52871495 Trre15g04223 15 52867675 52871495 ECH