Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04220 ATGAGCTCCATTGCCCTCAAATCCTTCATCACCCTCCGTCAACCCTCACCGGAAACCGCTCATTTCTCATTCCGACCAAAACCCATTACTCACCGCCGCAAATTCACCGTTGTCGCAGCTGCAAACAGCCAAAAACTCAATGGCCGTAACCTCCGTGTTGCCGTCATCGGCGGTGGTCCAGCAGGTGGTGCAGCAGCAGAAACACTAGCAAAAGGTGGTGTAGAAACCTTCCTCATTGAAAGAAAAATGGACAACTGCAAACCATGCGGTGGAGCAATACCTCTTTGCATGGTTGGTGAATTCGACTTACCATTAGACATCATAGACCGTCGTGTCACAAAGATGAAGATGATTTCGCCTTCGAATGTCGCCGTCGATATTGGAAGAACTCTTAAGTCTCATGAGTATATTGGTATGGTGAGGCGTGAGGTTCTTGATGATTATCTTAGGAACAGAGCTAAGGAAAATGGAGCGAATATTATAAATGGGTTGTTTTTGAAAATGGATATTCCTAAGGAGAAGAATTCACCTTATGTTCTTCATTATTCTTCTTATGATGGGAAAACTGGTGGGGTTGGTGAGAAATGTACTTTGGAAGTTGATGCTGTTATTGGTGCTGATGGAGCTAATTCTAGAGTTGCTAAGTCTATTGATGCTGGTGATTATGAATATGCTATTGCTTTTCAGGAGAGGATAAAAATCCCGGACGACAAAATGGCTTATTACGAGGATCTTGCAGAGATGTACGTGGGGGACGACGTTTCTCCCGATTTCTATGGTTGGGTATTTCCAAAATGTGACCACGTAGCTGTTGGCACTGGCACCGTGACACACAAGGGAGACATCAAGAAGTTCCAACTAGCAACAAGGAAAAGAGCCGAGGACAAGATCTTAGGAGGAAAGATCATCCGTGTGGAGGCTCACCCTATACCAGAACATCCAAGGCCACGAAGATTATCAGGAAGGGTCGCGCTCGTGGGCGACGCAGCTGGCTACGTGACCAAATGTTCCGGAGAAGGTATCTATTTTGCAGCCAAGAGTGGAAGAATGTGCGCAGAGGAAATCGTGCAGGGTTCAGCAAACGGGAAAAGGATGGTAGAAGAAAGTGATTTGAGGAAATATTTGGAGAAATGGGACAAGACTTATTGGCCTACTTACAAAGTTTTAGATATTCTTCAGAAGGTGTTTTATAGGTCTAATCCTGCTAGGGAAGCATTTGTGGAAATGTGTGCTGATGAGTATGTGCAGAAGATGACATTTGATAGTTATTTGTACAAGACTGTTGTGCCTGGGAATCCATTAGATGATATCAAGTTGGCAATCAACACCATTGGAAGCTTGGTTAGGGCAAATGCTCTAAGGAGGGAGATGGACAAACTTAATGTATGA 1389 0.4449 MSSIALKSFITLRQPSPETAHFSFRPKPITHRRKFTVVAAANSQKLNGRNLRVAVIGGGPAGGAAAETLAKGGVETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRRVTKMKMISPSNVAVDIGRTLKSHEYIGMVRREVLDDYLRNRAKENGANIINGLFLKMDIPKEKNSPYVLHYSSYDGKTGGVGEKCTLEVDAVIGADGANSRVAKSIDAGDYEYAIAFQERIKIPDDKMAYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRKRAEDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEEIVQGSANGKRMVEESDLRKYLEKWDKTYWPTYKVLDILQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKTVVPGNPLDDIKLAINTIGSLVRANALRREMDKLNV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04220 462 Pfam Pyridine nucleotide-disulphide oxidoreductase 52 221 IPR023753 GO:0016491
Trre15g04220 462 NCBIfam geranylgeranyl reductase family protein 53 355 IPR011777 GO:0016628
Trre15g04220 462 SUPERFAMILY FAD/NAD(P)-binding domain 51 433 IPR036188 -
Trre15g04220 462 NCBIfam geranylgeranyl reductase 51 449 IPR011774 GO:0045550
Trre15g04220 462 Gene3D - 50 461 IPR036188 -
Trre15g04220 462 PANTHER GERANYLGERANYL DIPHOSPHATE REDUCTASE 49 455 - -
Trre15g04220 462 FunFam Geranylgeranyl diphosphate reductase 50 457 - -
Trre15g04220 462 NCBIfam geranylgeranyl diphosphate reductase 52 449 IPR010253 GO:0015979|GO:0015995|GO:0045550
Trre15g04220 462 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 52 74 - -
Trre15g04220 462 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 320 335 - -
Trre15g04220 462 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 199 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04220 Trre-Chr15 52855575 52857984 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04220 K10960 - gmx:100779933 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04220 15 52855575 52857984 Trre15g04220 15 52855575 52857984 ECH