Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04219 ATGACCTTGATATATATCCTTGCCTTATCCACGACCCTAGTTGCAGGTGAGTGTACGTACGCGTTCATTCGTTCTCAACCTGTAGGCGGAGATTTCAAACCCAATTTTCCTCTTAAATCTCTCTCAACTTCTCCTTCCAATTCCCATTACCATTCATTCCCAGAGGTCGAGATGGCAGCATCAGCAGCAGCTACTTTTACTATTGGAACTGCCCAAACAGGGAGGTCACTTCCTCAATCAAACCCTTTTGGTTTGAAAGTCAATTCCCAGGTTAATTTTAAGATCTTCTCTGGTCTCAAGGCCATGTCATCTCTAAGATGCGAGTCTGAACCATCTTTCTTTGGCAACGAAACTAGTGCTGCTCTGCGTGCAACTTTTGCACCCAAAGCTCAAAAGGAAAACCGAAACATCAACCGCAATTTGCAGCCTCAGGCATCCTACAAAGTGGCTGTTCTTGGTGCTGCAGGAGGAATTGGTCAGCCACTTGCACTTCTCATTAAGATGTCGCCTTTGGTTTCCGACCTGCATCTTTATGATATCGCGAATGTTAAGGGAGTTGCTGCTGATATCAGTCATTGCAACACTCCTTCAAAGGTTTTGGATTTCACAGGTGCTTCTGAGTTGGCAAATTGTTTGAAAGGTGTGGATGTAGTTGTTATACCTGCTGGTGTTCCCAGAAAACCTGGCATGACTCGTGATGACCTTTTCAACATCAATGCCGGTATAGTCAGGGACTTGGTCACCGCTGTTGCAGATAATTGCCCTGGTGCTTTTATTCATGTTATCAGTAACCCGGTGAACTCTACAGTTCCTATTGCTGCTGAAATTCTGAAACAAAAGGGTGTTTATGATCCTAAAAAGCTCTTTGGTGTTACTACACTTGATGTTGTGAGGGCAAACACATTTGTTGCTCAGAAAAAGAACCTGAGGCTGATTGATGTAGATGTTCCTGTTGTTGGTGGTCATGCCGGGATTACCATTCTTCCTCTTCTGTCAAAGACAAGACCCTCAGCAAATTTCACTGATGAAGAAATTGAGGCGCTAACTGTCAGGATTCAAAATGCTGGAACTGAAGTTGTTGAGGCCAAGGCTGGTGCAGGGTCTGCTACTTTGTCAATGGCCTATGCAGCAGCTAGATTTGTTGAATCATCTCTTCGTGCGCTTGACGGTGACGCTGATGTGTATGAGTGCTCATTTGTACAGTCAGATCTGACTGACCTTCCGTTTTTTGCTTCAAGGGTGAAGATTGGTAGGAAAGGAGTCGAGGCTTTGATTCCAACTGATCTCCAAGGGTTGAGTGAGTATGAGCAGAAGGCTTTGGAAGCACTTAAACCAGAACTTAAGGCTAGCATTGAAAAGGGTATTGCTTTTGCTCAAAAGCAAACTGTTTCTGCTTAA 1398 0.4435 MTLIYILALSTTLVAGECTYAFIRSQPVGGDFKPNFPLKSLSTSPSNSHYHSFPEVEMAASAAATFTIGTAQTGRSLPQSNPFGLKVNSQVNFKIFSGLKAMSSLRCESEPSFFGNETSAALRATFAPKAQKENRNINRNLQPQASYKVAVLGAAGGIGQPLALLIKMSPLVSDLHLYDIANVKGVAADISHCNTPSKVLDFTGASELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVTAVADNCPGAFIHVISNPVNSTVPIAAEILKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTRPSANFTDEEIEALTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDADVYECSFVQSDLTDLPFFASRVKIGRKGVEALIPTDLQGLSEYEQKALEALKPELKASIEKGIAFAQKQTVSA 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04219 465 Gene3D - 292 463 IPR015955 GO:0003824|GO:0016616
Trre15g04219 465 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 292 457 IPR022383 GO:0016616
Trre15g04219 465 PANTHER MALATE AND LACTATE DEHYDROGENASE 134 461 - -
Trre15g04219 465 ProSitePatterns Malate dehydrogenase active site signature. 291 303 IPR001252 GO:0006108|GO:0016615
Trre15g04219 465 FunFam Malate dehydrogenase 292 460 - -
Trre15g04219 465 CDD MDH_glyoxysomal_mitochondrial 147 458 IPR010097 GO:0006099|GO:0030060
Trre15g04219 465 NCBIfam malate dehydrogenase 148 459 IPR010097 GO:0006099|GO:0030060
Trre15g04219 465 FunFam Malate dehydrogenase 145 291 - -
Trre15g04219 465 Pfam lactate/malate dehydrogenase, NAD binding domain 148 290 IPR001236 GO:0016491
Trre15g04219 465 SUPERFAMILY LDH C-terminal domain-like 291 458 IPR015955 GO:0003824|GO:0016616
Trre15g04219 465 Gene3D - 145 291 - -
Trre15g04219 465 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 141 291 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04219 Trre-Chr15 52851517 52854251 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04219 K00026 - gmx:100783173 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04219 15 52851517 52854251 Trre15g04219 15 52851517 52854251 ECH