Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04185 ATGTCTAAATTATCCTTAATGTTTTGTTCCCTCTTCGGACTCCTGGTTCTGTGTCATGCAGGTGAAAATAAGAAGATTGGATTTTATGAATTGAAGAAAGGAAATATGAGGCTTAATTTGACAAACTATGGTGCTTCAATTATTTCTGTTTTTGTACCTGATAAAACTGGCAAATTAGCTGATGTTGCTCTTGGCTATGATTCCATTGAGTCTTATGAGACTGATACATGTTACTTTGGTGCCCTTATTGGACGTGTGGCAAATAGAATTGGAGGAGCTCAATTCACTTTAGATGGCAAAACATACAAATTGCCTGCTAATGATCATGGGAACACACTCCATGGTGGAACCAAAGGGTTTGGTGATAATATATGGACAGTAGAATCTCACGAGGAAGAGAGTCATATAACATTTGTCTACAACAGTTACGATGGCGAACAAGGTTTTCCTGGAAAAGTCGAGGTAAGTGTGACATACATGTTAATCGAGAAACACATATTGGGAGTGAAAATGAATGCCAAGCCAATAGACAAAGCCACACCAATAAATCTAGCACAGCATTCTTATTGGAACCTAGGAGGCCACGACAGTGGTGACATTCTTAATCACACCGTTCAAATCTTCGGTTCATCCATCACACCAGTAGACGATAAACTCATCCCAACAGGAAAACTCCAATCTGTAAAGGACACACCATATGACTTCCTTACACCAAAACCAGTTGGAAGTCAAATTAATGAACTTCCTGGTTTATACGACATCAACTATGTGCTCGACAAGACTGGTGGTCGAAATCATTTGAGTAAGGTTGCCGTCGTGAGAGATCCTGTCTCAGGAAGGAAAATGGAGTTGTGGTCAGACCAAGTTGGATTACAATACTATACTAGTGGCATGTTACCGGATACTAAAGGAAAGGGTGGAGCTATGTATCACAAGTATGCTGGAATTGCTTTGGAGACACAAGGTTTTCCAGATTCAGTGAATCAACCTAGCTTTCCATCTCAAATTGTGAAACCTGGAGAGACTTATAAGCATATCATGGTTTATAGATTCACAGCTAGCTAA 1065 0.3981 MSKLSLMFCSLFGLLVLCHAGENKKIGFYELKKGNMRLNLTNYGASIISVFVPDKTGKLADVALGYDSIESYETDTCYFGALIGRVANRIGGAQFTLDGKTYKLPANDHGNTLHGGTKGFGDNIWTVESHEEESHITFVYNSYDGEQGFPGKVEVSVTYMLIEKHILGVKMNAKPIDKATPINLAQHSYWNLGGHDSGDILNHTVQIFGSSITPVDDKLIPTGKLQSVKDTPYDFLTPKPVGSQINELPGLYDINYVLDKTGGRNHLSKVAVVRDPVSGRKMELWSDQVGLQYYTSGMLPDTKGKGGAMYHKYAGIALETQGFPDSVNQPSFPSQIVKPGETYKHIMVYRFTAS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04185 354 Pfam Aldose 1-epimerase 29 350 IPR008183 GO:0005975|GO:0016853
Trre15g04185 354 SUPERFAMILY Galactose mutarotase-like 20 351 IPR011013 GO:0003824|GO:0005975|GO:0030246
Trre15g04185 354 PANTHER ALDOSE-1-EPIMERASE 25 352 - -
Trre15g04185 354 PIRSF GALM 16 354 IPR015443 GO:0016853|GO:0019318
Trre15g04185 354 Gene3D - 17 353 IPR014718 GO:0030246
Trre15g04185 354 CDD galactose_mutarotase_like 29 351 IPR047215 GO:0016853
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04185 Trre-Chr15 52460842 52463378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04185 1 353 Miscellaneous Gene Families AT3G47800 57.224 1.33e-148 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04185 K01785 - gmx:100806956 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04185 15 52460842 52463378 Trre15g04185 15 52460842 52463378 ECH