Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04174 ATGTCTACTCCTGCTAGGAAGAGATTGATGAGAGATTTTAAGAGGTTGCAACAAGACCCACCTGCAGGAATCAGTGGTGCTCCTCAGGATAACAATATTATGCTGTGGAATGCTGTTATATTTGGTCCAGATGATACTCCTTGGGATGGAGGCACGTTTAAGTTGACTCTTCAATTTTCTGAGGATTATCCAAACAAGCCGCCCACTGTACGATTTGTCTCCCGGATGTTTCATCCAAACATTTATGCAGATGGAAGTATTTGTCTTGATATATTGCAAAATCAGTGGAGTCCTATATATGATGTAGCTGCGATACTAACTTCTATCCAGTCATTGCTTTGCGATCCCAATCCAAATTCTCCTGCAAACTCTGAAGCGGCTCGAATGTTCAGTGAGAACAAGCGTGAGTACAATCGTAGAGTTCGGGAAATTGTGGAGCAGAGTTGGACAGCTGACTAA 459 0.427 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04174 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 149 - -
Trre15g04174 152 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Trre15g04174 152 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 150 IPR000608 -
Trre15g04174 152 FunFam Ubiquitin-conjugating enzyme E2 2 1 148 - -
Trre15g04174 152 SUPERFAMILY UBC-like 1 150 IPR016135 -
Trre15g04174 152 CDD UBCc 7 145 IPR000608 -
Trre15g04174 152 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 77 92 IPR023313 -
Trre15g04174 152 Pfam Ubiquitin-conjugating enzyme 8 144 IPR000608 -
Trre15g04174 152 SMART ubc_7 7 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04174 Trre-Chr15 52350658 52353134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04174 7 120 Miscellaneous Gene Families AT1G17280 31.092 4.22e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04174 K10573 - fve:101312627 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04174 15 52350658 52353134 Trre15g04174 15 52350658 52353134 ECH